Arvicanthis niloticus (African grass rat): 117710283
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Entry
117710283 CDS
T08817
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1b allele 3-like
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117710283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117710283
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
anu04054
]
117710283
Membrane trafficking [BR:
anu04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
117710283
Pattern recognition receptors [BR:
anu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117710283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
FIIND
UPA-FIIND
NLRC4_HD2
CARD
NOD2_WH
LRR_6
AAA_16
NPHP3_N
NB-ARC
nSTAND3
LRR_1
AAA_22
AAA_14
AAA_30
HKR_ArcB_TM
Motif
Other DBs
NCBI-GeneID:
117710283
NCBI-ProteinID:
XP_034360921
LinkDB
All DBs
Position
6:50461644..50508360
Genome browser
AA seq
1221 aa
AA seq
DB search
MEESQTEQKSDTKVAQCQVKGTSQGAVEQQDVDTTSKTRRWVLEDLLKDLAQSDSLLKHR
KYIKNPKSSLCNPFITTESSCHGFHGKASLMPKEFAGPGTFQVQMSKEETLYSTQSLKGE
ILFQNFTNLLLFQKLCPRGSEDLGRKNWHSCVPEEEGHVIEIQDLFGPNLDTQKKPQLVI
IEGAAGIGKSTLAMQVRRAWKEGQLYRDRFQHVFFFSCRELAQCKQLSLAELIAQGQEVH
TASIRQILSHPEKLLFILDGIDEPAWVLEEQNPELCLHWSQTQPVHTLIGSLLGKSVLPE
ASFLLTARTTALQKIIPSLGKQRQVKVLGLTVVERQKYFCRYFANQRVAITALKMLNPVL
LTLCEVPWVCWLVCTCLKKQMEQGGDLSLTSQTTTALCLKYMSLTTPGQHMRTQLRALCS
LAAEGICKRRTLFTESDLCNQGLPEDATATFLKIGILQKQPSSLSYSFAHLCLQEFFAAI
FYILKHSEERLGDMEDYRIVESLEEQYGRQNLFEAPTVRFLFGLLSKEGLKEMEQFFSCN
FSRKTKLKLLWHILEKYQPHQPPFLGLHHCLYENQEKELLTQVMHDLQGTIVPDPNDIAH
TVFQTNVKHLVIQTDMELMVVTFCIQFCCHVRSLQVNMERQKGYALMAPRMVLYRWTPIT
DASWKILFYNLKFTRNLEELDLSGNPLSYSAVQSLCKTLQLPNCHLKTLWLVECGLTCKH
CSLLASVLSVHSSLTELDLQLNDLGDDGVRLLCEGLRNPACNLSILRLDVASLSDQMITE
LRTLEAKNLKLHISSIWMPHMMVPTENMDGDDSLTSFKQQRQQSGDKDMEPLGTEDDFWG
PTGPIATEVVDRERSLYRVQLPMAGSYHCPSTGLHFVVKRAVVIEIEFCAWSQYLDKTPL
QDNFMVVGPLFDIKTEQGAVTAVYLPHFVSFQDTKESTFDFKVAHFQEHGMVLETPDRVK
HRYAVLKNPRFSPIGVVLRIIPAARRFIPITTITLIYYRLNLEEVTLHLYLIPNDCTIQK
AIDDEEMKFQFMRINKPPPVDNLYIGSRYIVSGSEKLEITPKELELCYRSSKEFQLFSEI
YVGHMGSEIKLQIKNKKHMQLIWEALLKPGDLRPALPRITSAPKDAPSLIHFMDQHREQL
VARVTSVDPLLDKLHNLVLSEEDYEAVRAETTNQDKMRKLFSFSRSWSQACKDQFYQALK
ETHPHLVLDLLEKSGRVSLGS
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcagactgagcagaaaagtgacacaaaggtggctcagtgtcaagtaaag
gggacgagtcagggggctgtggaacaacaggacgtggacaccacttccaaaacaaggaga
tgggtgttggaggacctgctgaaggacttagcccagtcagacagtctcttgaagcatcgt
aagtacatcaagaaccccaagtcatcactctgcaacccattcatcaccactgagtcctcc
tgccatggttttcatgggaaggctagcctcatgccaaaagagttcgctggcccaggaaca
tttcaagtacagatgagtaaagaagagactctttactctacacagtcattgaaaggggag
attttgttccaaaatttcacaaatctactactcttccaaaaattgtgcccaagaggctca
gaggacttgggcaggaaaaactggcattcatgtgtaccagaagaagaaggacatgtgatt
gagatccaagacttatttggcccaaatttagatacccagaaaaagcctcagttagtcata
atagagggtgctgctgggattgggaagtcaacactggccatgcaggtgaggagagcctgg
aaggaaggtcagctctacagggatcgcttccagcatgtcttcttcttcagctgcagagag
ctggcccagtgcaagcagctgagtctggctgagctcatagcacaaggtcaggaagtacac
acagcttccatcaggcagatcctgtctcaccctgagaagctgctcttcatcctggatggc
atagatgagccagcatgggtcttggaggagcagaatcctgagctctgtctgcactggagt
caaacacagcctgtacacacactgatagggagtttgctggggaaatctgtccttcctgag
gcttccttcttgctcacagctcggaccacagctctacaaaagatcattccttccttgggg
aaacaacgtcaggtgaaagtcctaggactcactgtggttgaacggcagaaatatttctgc
agatattttgcaaatcaacgagttgcaattaccgctcttaagatgcttaacccagtgctc
ctgaccctgtgtgaggttccgtgggtgtgctggctggtctgcacttgcctgaaaaagcag
atggagcaaggtggagacctctcactgacctcacagactaccacagccctctgcttgaaa
tacatgtctctgacaaccccaggtcagcacatgaggacccagctcagagccctctgctca
ctggctgctgaggggatctgcaaaagaaggaccctgttcactgaaagtgacctctgtaac
caagggttaccagaggatgccactgccactttcctgaagattggcatccttcaaaagcag
cccagctctctgagctacagctttgcccacttgtgtctccaggagttctttgcagcgata
ttctacatcttgaagcatagtgaggaaagactcggcgatatggaagattacagaattgtg
gagtcactggaagaacaatatggaagacaaaacctgtttgaggcacccactgtgcgcttt
ctatttggtcttttgagtaaagagggattgaaagaaatggaacagttcttttcctgcaac
ttttctaggaagacaaagttgaagctgctatggcacatcctagagaaataccaaccccat
caaccaccttttctgggtttgcaccactgtctgtatgaaaatcaggaaaaggagctcctg
acacaagtgatgcatgatcttcaaggaacaatagtgcctgacccaaatgacattgcacac
acagtgttccagacaaatgtgaagcacctggtgatacagacagacatggagctcatggtg
gtcactttctgcattcagttctgctgtcatgtgaggagtctccaggtgaatatggaaaga
cagaaaggatatgcactgatggccccaaggatggtcctgtataggtggaccccaatcact
gatgccagttggaagattctcttctacaatcttaaattcaccagaaatctggaggagctg
gacctaagtggaaatccattgagctactctgcagtgcaaagtctttgtaaaaccctgcaa
ctccctaattgccatctaaagaccttgtggcttgttgaatgtggcctcacatgcaaacac
tgctcactcctggcctcagtgctcagtgtccactccagcttgactgagctagacctgcag
ctgaatgacctgggtgatgatggtgtgagactgctgtgtgagggactcaggaatcctgcc
tgcaacctcagcatcctgcggctggacgtggcctctctcagtgaccagatgattacagag
ctcaggactctggaggcaaagaatctgaagttgcacatctccagcatatggatgccacac
atgatggtccccaccgagaacatggatggagatgatagcctgacctcattcaagcagcag
agacaacagtcaggagacaaggacatggaacctctggggactgaagatgacttctgggga
cctacaggacctatagctactgaggtggttgacagagagaggagcctataccgagttcag
ttgcctatggctggttcttaccactgtccaagcacaggactccattttgtggtaaaaagg
gcagtggtaatcgagattgaattctgtgcctggagccaatacctggacaagactcccttg
caagacaatttcatggtggttggacctctgtttgacatcaaaactgagcaaggagctgtg
actgcagtgtacctccctcattttgtgtccttccaagacacaaaggaaagcacatttgac
ttcaaggtggcccactttcaagaacatgggatggtattagaaacgccagatagggtgaag
catcgctatgcagtactgaaaaacccaagattctccccaataggagttgtactgagaata
atccctgctgcccgccgcttcatccccatcactaccatcacactgatctactatcgcctc
aatcttgaagaagtcacccttcacctctacctaatccccaatgactgcaccattcagaag
gccattgatgatgaagaaatgaagtttcagtttatgagaataaacaagccacccccagta
gacaatctttacattggctctcgctacatcgtgtctggatctgaaaagctggaaatcacc
ccaaaggaactggagctgtgctacaggagcagcaaggaattccagctcttctctgagatc
tacgttggacacatggggtcagagattaagctgcaaatcaaaaacaaaaagcacatgcaa
ctcatatgggaggccttgctgaaaccaggagacctcagacctgctctacctaggataact
tcagcccccaaagatgctccttccttgatacacttcatggaccagcatcgggagcagctg
gtggcccgagtgacatcagtggatcctctcttggacaagctgcataatctggtgctgagt
gaagaagattatgaggcagtgcgggctgagaccacaaaccaagacaagatgagaaagctc
ttcagcttcagccgatcctggagtcaagcctgcaaagaccagttctaccaagctctgaag
gagacccatcctcacctggttttggacctcctggagaagtctggcagggtctctttggga
tcctga
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integrated database retrieval system
