Arvicanthis niloticus (African grass rat): 117710285
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Entry
117710285 CDS
T08817
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1b allele 5-like
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117710285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117710285
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
anu04054
]
117710285
Membrane trafficking [BR:
anu04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
117710285
Pattern recognition receptors [BR:
anu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117710285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIIND
NACHT
UPA-FIIND
NLRC4_HD2
CARD
NOD2_WH
LRR_6
AAA_16
NPHP3_N
nSTAND3
Zeta_toxin
NB-ARC
LRR_1
DnaB_C
LRR_4
Motif
Other DBs
NCBI-GeneID:
117710285
NCBI-ProteinID:
XP_034360922
LinkDB
All DBs
Position
6:50567485..50610954
Genome browser
AA seq
1160 aa
AA seq
DB search
MPRIAGTIPEMYMNQKRENLSSIQPSKRENLFQNFTNLLLSRKFCPQGSKKFVKKSWHRY
VPKKKRQMIEIQDLFGQNIRTQKKPQLVIIGGAAGIGKSMLAMEVRRAWKEGQLYRDRFQ
HVFFFSCRELAQCKQLSLAELIEQGQEVPTAPIRQILSHPEKLLFILDGIDEPAWVLKDK
NPQLCPHWSQTQTVHTLLGSLLGKSILPGASFLLTARNTALQKLIPSLKQPHQMEVLGFS
VLGRENYFYKYFVKGRDAITAFRLVKSNPVLLTLCEVPWVCWLVCNCLEKQMEQGRVLSL
TSETTTALCLKYLSLKIQGQYMRIQLRALCSLAAEGICQRRTLFSENDLCNQGFAEDAIA
TFLKIGVLQKQPSSLSYSFAHLCLQEFFAAMSYILENSEERHGDMEDDRIVKTLVEQYGR
ENLFEAPTVRFLFGLLNKQGVREMEKIFGCKLPRKTTLKLLWRIIGDSPYQLHHLGLFHC
LFENREEKLLTQVMYNLHLTEPSPNYMEATLFQTNVNHLVVQTDMELMAVTFCLKFCYQV
TTLQLNRKGPQGHELTPRRMVLYRWTPITDASWKILFCNLKFTRNLKELDLSGNPLSYSA
ACSLCKALRHHGWQLKTLWLVDCGLTSTHCSLLANVLSVHFSLTEVDLQLNDLGDDGVRL
LCEGLRNPDCNLRILWLDQASLSDQVITELRTLEAKYPKLLISSTWKPHGMVPTTNMDKK
KNLVEEAILTFHPCCPVSPGDKLIEPLGTENDFWGPTGHVATEVVDRERNMYRVQLPVAG
SYHCPSTGLHFVVTRAVTIEIKFCSWSQYLDKTPLQHSLMVVGPLFDIKAEQGAVTAVYL
PHFVALQDGKVDTSLFHVAHFQEHGMVLEIPARVEQHYAILEKPSFSPVGVLLRLIPAVG
QFIPITSITLIYYHLYLKDVTFHLYLVPNDCTIQKAIDDEEMKFQFVRINKPPPVDTLYV
GSRYIVSGSKKVEIIPKELELCYRSPGEFQLFSEIYVGHMGSGIKLQLRDKRHMKLIWEA
LLKPEFNLDHLCDQEFCTILKNIVITPTGDLRPALPMNAQACKDAPSLIHFMDQHREQLV
ARVTSVDPLLDRLHNLVLSEESYEAVRAETTNQDKMRKLFSFSRSWSQACKDQFYQALKE
THPHLVMDLLEKSGRVSLGS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggatcgcaggaaccattccagaaatgtatatgaatcaaaaaagggagaacctt
tcctccatccagccatcaaaaagggagaatttgttccaaaatttcacaaacctactactc
tcccgaaaattttgcccacaaggctcaaagaagtttgttaagaaaagctggcatcgatat
gtaccaaaaaaaaaaagacaaatgattgagatccaagacttatttggccaaaacatacgt
acacagaaaaagcctcaattagtcataatagggggggctgctggaattgggaagtcaatg
ctggccatggaggtgaggagagcctggaaggaaggccagctctacagggatcgcttccag
catgtcttcttcttcagctgcagagagctggcccagtgcaagcagctgagtctggctgag
ctcatagaacaaggccaggaagtgcccacagctcccatcaggcagatcctgtctcaccct
gagaagctgctcttcattctggatggcatagatgagccagcatgggttttgaaggacaag
aatcctcagctatgtccgcactggagtcaaacacagactgtgcacacactgctgggaagt
ttgctgggaaaatccatccttcctggtgcttccttcctgctcacagctcggaacacagct
ctgcagaagcttattccttccttgaagcagccacatcagatggaagttctaggattctct
gtgttgggacgggaaaactatttctacaaatattttgtgaagggaagagatgcaattact
gcatttagattggttaaatcaaacccagtgctcctgactctgtgtgaggttccctgggtg
tgctggctggtctgcaattgcctggaaaagcagatggaacaaggaagagtactctcactg
acctcagagaccaccacagccctctgcctgaaatacctttcactgaaaatccaaggccag
tacatgaggatccagctcagagccctctgctcactggctgctgagggaatctgccaaaga
aggaccctgttcagtgaaaatgacctctgtaaccaagggtttgcagaggatgccattgcc
actttcctgaagattggtgtccttcaaaagcagcccagctctctgagctacagctttgcc
cacttgtgtctccaggagttctttgcagcaatgtcctacatcttggagaacagtgaggaa
agacatggtgatatggaagatgacagaattgtgaaaacactggtagaacagtatggaaga
gaaaacctgtttgaggcacccactgtgcgcttcctatttggtcttttgaataaacaggga
gtgagagaaatggaaaagatctttggctgcaagcttcctaggaagacaacgttgaagctg
ctatggagaatcataggggactcaccctatcaacttcatcatctgggtttgttccactgt
ctgtttgagaatcgggaagagaagctcctgacacaggtgatgtataatcttcacttaaca
gagcctagcccaaattacatggaagccacattgttccagacaaacgtgaatcacctggtg
gtacagacagacatggagctcatggccgtcactttctgccttaagttctgctatcaggtg
accactcttcagctgaacagaaaagggccgcagggacatgagttgacgccccgcaggatg
gttctgtacaggtggaccccaatcactgatgccagttggaagattttattctgcaatctc
aaattcaccagaaacctgaaggagctggacctaagtggaaatccactgagctattctgca
gcatgtagtctttgtaaggccctgaggcaccatggctggcaactaaagaccttgtggctt
gttgactgtggcctaacatccacacactgctcactcctggccaacgtgctcagtgtccac
ttcagcctgactgaggtagacctgcagctgaatgacctgggtgatgatggtgtgaggctg
ctgtgtgaggggctcaggaatcctgactgcaacctcagaatcctatggctggaccaggcc
tctctcagtgaccaggtgattacagagctcaggaccctggaggcaaagtatccgaagctg
ctcatctccagcacatggaagccacatggaatggtccctactacaaacatggataaaaaa
aaaaatcttgttgaagaagcgatattgacctttcatccatgctgtcctgtttctccagga
gataaactcatagaacctctggggactgagaatgacttctggggccctacaggacatgtg
gctactgaagtggttgacagagagagaaacatgtaccgagttcagttgcccgtggctggc
tcctaccactgtcccagcacaggactccactttgtggtgacaagggcagtgacaatcgag
attaaattctgttcctggagccaatacctggacaagactcccttgcaacacagtctcatg
gtggttggacctctgtttgacatcaaggctgagcaaggagctgtgactgctgtgtacctc
cctcattttgtggctctccaagatggaaaggtggacacctccttgttccatgttgcccac
tttcaagaacatggaatggtcctagaaatcccagcaagagtggaacagcattatgcaata
ctggaaaagccaagcttctccccagtgggagttctactgagattgattcctgctgttgga
caattcatccccatcacttccatcacattgatctactatcacctctatctcaaggacgtc
acctttcacctttacctggtccccaatgactgcactattcagaaggcaattgatgatgaa
gaaatgaagtttcagtttgtgcgcataaacaagccacctccagtggacactctttatgtt
ggttcccgctatatcgtgtctggctccaaaaaggtggaaattatcccaaaggaactggag
ctgtgctaccgaagccctggggaattccagctcttttctgagatctacgttggtcacatg
ggttcagggattaaactgcaactcagagacaagaggcatatgaaactcatatgggaggcc
ttgctgaaaccagagtttaacttggaccatctgtgtgaccaagagttttgtactatcctg
aagaacatagtgatcacacctacaggagacctcagacctgctctgcccatgaatgcacaa
gcctgtaaagatgctccttccttgatacacttcatggaccagcatcgggagcagctggtg
gcccgagtgacatcagtggaccctctactggacaggctgcataatctggtgctgagtgaa
gaatcatatgaggcagtgcgggctgagaccacaaaccaagacaagatgaggaagctcttc
agcttcagccgatcctggagtcaagcctgcaaagaccaattctaccaagctctgaaggag
acccatcctcacttagtcatggacctcctggagaagtcaggcagggtctctttgggatcc
tga
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integrated database retrieval system
