Arvicanthis niloticus (African grass rat): 117710529
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Entry
117710529 CDS
T08817
Symbol
Scn4a
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117710529 (Scn4a)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117710529 (Scn4a)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
117710529
NCBI-ProteinID:
XP_034361330
LinkDB
All DBs
Position
6:16069649..16100146
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AA seq
1839 aa
AA seq
DB search
MASSSLPSLVPPGPHCLRPFTPESLAAIEQRAVEEEARLQRNKQMEIEEPERKPRSDLEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYNDKKTFIVLNKGKAIFRFSATPALYMLSPFSLV
RRVAIKVLIHAIFSMFIMITILTNCVFMTMSNPPSWSKDVEYTFTGIYTFESLIKMLARG
FCIDDFTFLRDPWNWLDFSVITMAYVTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPMNDTNTTWYGNDTW
YANDTWYGNDTWYANDTWNSPESWTSNSTFDWEAYINDEGNFYFLEGSNDALLCGNSSDA
GHCPEGYECIKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIF
FVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKFKKHQEELEKAK
AAQALEGGEEADGDPTHNKDCNGSLDTSGEKGPPRPSCSADSAISDAMEELEEAHQKCPP
WWYKCAHKVLIWNCCAPWVKFKHIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHF
DHVLSVGNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY
KECVCKIASDCNLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVM
VIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIGFAKTFLLGLLHG
KILSPKDIMLSLGEPGGAGENGESAPEDEKKEPPPEDENKEQKENHILNHVGLTDGPRSS
IELDHLNFINNPYLTIQVPIASEESDLEMPTEEETDTFSEPEDIKKPLQPLYDGNSSVCS
TADYKPPEEDPEEQAEENPEGELPEECFTEACVKRCPCLYVDISQGRGKMWWTLRRACFK
IVEHNWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFILEMLLKWVA
YGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGM
RVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERFDIDVVNNK
SDCESLMYTGQVRWMNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPAYE
VNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPQNKIQGMVYDFVTKQVFDISIMILICLNMVTMMVETDDQSQLKVDILY
NINMVFIIIFTGECVLKMFALRQYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTL
FRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAY
VKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTNIKG
DCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESTEPLSEDDFEMFYETWEK
FDPDATQFIDYSRLSDFVDTLQEPLRIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKE
VLGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKIQRAYRRHLLQRS
VKQASYMYRHSQDGNGDGAPEKEGLLANTMNKMYGSEKEDNGVQSQGEEEKGSTEDAGPT
VEATPTSSSNTTLTPPPAPPPSSPPQGQTVRPGVKESLV
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggccagctcatctctgccctccctggtccccccgggtccccactgcctgcgccccttc
accccagagtccctggcagccatagagcagcgggcagtggaggaggaggcccggctgcag
cggaacaagcagatggagattgaggagcctgagcggaagccacgcagtgacctggaagct
ggcaagaacctcccactcatctatggggaccccccacccgaagtcattggcatccccctg
gaggacctggacccttactacaatgacaagaagaccttcattgtgctcaacaaaggaaag
gccatctttcgattctcggccacccccgccctctacatgctgagccccttcagcctcgtc
cggagggtggccatcaaggtgctcatccacgcgatcttcagcatgttcatcatgatcacc
atcttgaccaactgtgtgttcatgaccatgagcaacccgccatcttggtccaaggacgtg
gagtacaccttcacagggatctacacctttgagtccctcattaagatgctggcccgaggc
ttctgcattgatgacttcacattcctccgagacccctggaactggctggacttcagtgtc
attacaatggcgtatgtgacagagtttgtggacttgggaaacatctcagccctgaggacc
ttccgtgtgctgcgggccctgaaaaccatcacggttattccaggcctgaagacgattgtg
ggagccctgatccagtctgtgaaaaagctgtcggatgtcatgattctcactgtcttctgc
ctgagtgtctttgccctggtggggctgcagcttttcatgggaaacctacgtcagaagtgc
gtgcgttggcccccgcccatgaatgacaccaacaccacgtggtacggcaatgatacgtgg
tacgccaatgatacgtggtatggcaacgatacgtggtacgccaacgacacttggaatagc
ccagagagctggaccagcaactctacctttgattgggaggcctacatcaatgacgaaggg
aacttctatttcttggagggttccaatgatgccctgctctgtgggaatagcagtgatgcc
gggcactgccccgagggctacgaatgcatcaaggctgggcggaaccccaactatggttac
accagctacgacaccttcagctgggccttcctggctctcttccgtctcatgacgcaggat
tactgggagaaccttttccagctgacccttcgagcagctggcaagacctacatgatcttc
ttcgtggtcatcattttcctgggttccttctacctcatcaacttgatcctggcggtggtg
gcgatggcatacgctgagcagaatgaagctaccctggccgaagaccaggagaaagaggag
gagttccaacagatgcttgaaaaattcaaaaaacatcaggaggaactggaaaaggccaag
gctgcccaggctctggaaggtggagaggaggcagatggggacccaacccacaacaaagac
tgcaatggtagcctggatacatccggggagaaggggcccccgaggccaagctgcagcgca
gacagtgccatctcagatgctatggaggagctggaagaggcccaccagaagtgcccaccg
tggtggtacaagtgtgcgcacaaagtgcttatctggaactgctgtgccccgtgggtgaag
ttcaaacacatcatccacctgattgtcatggacccctttgtggacctgggcatcaccatc
tgcatcgtgctcaacaccctcttcatggccatggagcactaccccatgactgagcacttt
gaccacgtgctctccgtgggcaacttggtcttcacaggcatcttcactgcagagatggtg
ctgaagctgattgccatggacccctacgagtatttccaacagggctggaacatctttgac
agctttatcgtcaccctcagcctggtggagctgggcctggccaacgtacaggggctctca
gtgcttcgttctttccgtctgctgcgtgtcttcaagctggccaagtcgtggccaacgctc
aacatgcttatcaaaatcattggtaactcagtgggcgcgctgggcaacctgaccctggtg
ttggccatcatcgtcttcatcttcgccgtggtgggcatgcagctgtttggcaagagctac
aaggaatgtgtgtgcaagattgcctcagactgcaacctgccccgctggcacatgcatgat
ttcttccactccttcctcatcgtcttccgcatcctctgtggggagtggatcgagaccatg
tgggactgcatggaggtggctggccaggccatgtgcctcaccgtcttcctcatggtcatg
gtcatcggtaacctggtggtcctgaatctgtttctggctctcctgttgagttccttcagt
gctgacagcctggcagcgtcagatgaagacggggagatgaacaacctacagattgccatc
gggcgtatcaagtggggcattggctttgccaaaaccttcctcttggggctgttacatggc
aagatcctgagccccaaggacataatgctcagccttggcgagcccgggggtgctggggaa
aatggggagagtgctcccgaggatgagaagaaggagccgcccccggaagatgagaacaag
gagcagaaagagaaccatatcctgaaccatgtgggcctgaccgacggtccccgctccagc
atcgagctggatcaccttaacttcatcaacaacccctacctcaccatccaggtgcccatt
gcctctgaggagtctgacttggagatgcccacggaggaggagaccgacaccttctcggag
cctgaggacattaagaagccactacaacccctctacgacggtaactcctccgtctgcagc
acagctgactacaagccccctgaagaggaccctgaggagcaggctgaggagaaccctgag
ggggagttgcctgaggaatgcttcacagaggcctgtgtgaaacgctgcccctgcctctat
gtggacatctcccagggccgtgggaaaatgtggtggacactgcgcagggcctgtttcaag
attgttgagcacaactggtttgagaccttcattgtcttcatgatcttgctcagcagtgga
gccctggccttcgaggacatctacattgagcagcggcgggtcatccgcaccatcctggaa
tatgctgacaaggtcttcacgtacatctttatcctggagatgctgttaaagtgggtggcc
tacggcttcaaggtgtatttcaccaatgcctggtgctggctcgatttcctcatcgtagat
gtctccatcattagcctggtggctaactggctgggctactctgagctgggacccatcaaa
tccctgcgcacgctccgggccctgcgacctctgagggcactgtcccgatttgagggcatg
agagtggtggtgaacgccctcctgggagccatcccttccatcatgaacgtgcttcttgtg
tgcctcatcttctggcttatcttcagcatcatgggggttaacttgtttgctggaaagttc
tactactgcatcaacacaaccacctctgagaggttcgacatcgacgtggtcaacaacaag
tccgactgtgagagtctcatgtacacaggccaggtccgctggatgaacgtcaaggtcaac
tacgacaacgtgggtctgggctacctctccctcctccaggtggctactttcaagggttgg
atggacatcatgtatgcagctgttgactcccgggagaaagaggagcaaccagcctatgag
gtgaacctctacatgtacctttacttcgtcatcttcatcatcttcggctccttcttcacc
ctcaatctcttcatcggcgtcatcattgacaacttcaaccaacaaaagaagaagtttgga
gggaaagacatcttcatgacagaggaacagaagaaatactacaatgccatgaagaagctt
ggctccaagaagccccagaagccaattccccggcctcagaacaagatccagggcatggta
tatgacttcgtgacgaagcaggtgtttgacatctccatcatgatcctcatctgcctcaac
atggttactatgatggtggagacggacgaccagagccagctcaaggtggacatcctgtat
aacatcaacatggtcttcattatcatcttcacaggggagtgtgtactgaagatgtttgcg
ctacgccagtactacttcaccattggctggaatatcttcgactttgtggttgtcatcttg
tccattgtgggccttgcgctctctgacttgatacagaaatactttgtgtcacccacactg
ttccgtgtgatccgcttggctcggatcgggcgtgtcttgcgtctgatccgtggggccaag
ggcatccggacgctgctgtttgccctgatgatgtctctgcctgccctcttcaacatcggt
ctcctgctctttctggtcatgttcatttactccatctttggcatgtctaacttcgcctat
gtcaagaaagagtcaggcatcgacgacatgtttaactttgagacctttggcaacagtatc
atctgcctcttcgagatcaccacatcagctggctgggacgggcttctgaaccccatcctc
aacagtgggcccccagactgtgacccgacgttggagaacccaggcaccaatataaagggt
gactgcggcaacccatccataggcatctgtttcttctgcagctacatcatcatctccttc
ctcatcgtggtcaacatgtacatcgccatcatcctggagaatttcaatgtggccactgaa
gagagcactgagcccctcagtgaggacgactttgagatgttctatgagacctgggagaag
ttcgaccccgacgctactcagttcatcgactacagccgcctttctgactttgtggacacc
ctgcaggagccgctgagaatcgccaaacccaataagattaaactcatcacattagacctg
cccatggtgcctggggacaagatccactgcctggacatcctctttgccctgaccaaagag
gtactgggcgactctggggaaatggatgccctgaagcagaccatggaggagaagtttatg
gcagctaacccctccaaggtttcctatgaacccatcaccaccaccctcaagaggaagcag
gaggaggtgtgtgctatcaaaatccagagggcctaccgccggcacctgcttcagcgctct
gtgaagcaggcctcttacatgtaccgccacagccaggatggcaatggtgacggggcccct
gagaaggagggattgcttgccaacaccatgaacaagatgtatggctctgagaaagaggac
aacggtgtacagagccagggggaggaagagaagggctctacagaggatgctggacccacc
gtggaagccacacccaccagcagctcgaatactaccctgactcctcctcctgcaccccca
ccatcatcaccaccacaagggcagacagtgcgcccaggggtcaaagagtctcttgtctag
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integrated database retrieval system
