Arvicanthis niloticus (African grass rat): 117710976
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Entry
117710976 CDS
T08817
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1a-like isoform X1
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117710976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117710976
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
anu04054
]
117710976
Membrane trafficking [BR:
anu04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
117710976
Pattern recognition receptors [BR:
anu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117710976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIIND
NACHT
UPA-FIIND
NLRC4_HD2
CARD
NOD2_WH
LRR_6
NPHP3_N
AAA_16
NB-ARC
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_14
AAA_30
LRR_1
Motif
Other DBs
NCBI-GeneID:
117710976
NCBI-ProteinID:
XP_034362222
LinkDB
All DBs
Position
6:50407790..50447252
Genome browser
AA seq
1172 aa
AA seq
DB search
MEKSQSRQKYNTKVPQHEGQKHLDTTYKTRTHMKVELNKHTGKQKKHLKLTSCTKIYMKK
GKKTLYPTQSLKRENLFQNFTNLLLFQKLCTRGSENLVRKSWHPCVPEEGGHMIEIQDLF
GPNIGIQKGPQLVIIEGAAGVGKSVLAMQVRRAWKEGQLYRDRFQHVFFFSCRELAQGKQ
LSLAELIAQGQEVPISPIIQILSHPEKLLFILDGIDEPAWFLEEQNTELCLHWSQVQPVH
TLLGSLLGKSILPEASFLLTARTTDIQNFIPSLGHPCQIEVLGFIEFERVEYFYTYFASL
SDAITAFELVGSNPVLLTLCEVPWVCWLVCTCLKKQTDQGGDLLLTSQTTTALCLKYLSL
IIPGKHMGTQLRALCSLAAQGICQRRTLFSESDLRNQGFAEDAIVTFLEIGVLQKQTSTL
RYSFVHLCFQEFFAAISYILEDSEEKHGDMEDDRIVETLVERYGSQNLFETPTVRFLFGL
LSKEGLKEMEKFFSCSLPGKTKLKLLRHILAKSQPYQPPCLGLLHCLYENQEKELLTHVM
HDLQGTIVPGPNDIAHTVFQTKEKHLVIQTDMELMVVTFCIQFCCHVRSLQLKRKGQHEH
KLTAPRVVLCRWTPITDASWKILFYNLKFTRNLEELDLSGNPLSYSAVQSLCTTLSLPDC
QLKTLWLVECGLTTTYCSLLASVLSVNSSLTELDLQLNDLGDDGVRLLCDGLRNPACNLS
ILWLDQASLSDQVITELRTLEARNPKLLISSTWKPHVMVPTKNMDKEEVGDSPTSFKKKT
QESGDKPLESLGTEDDFWGPMGPVATEVVDRERNMYRVQLPMAGSYHCPSTGLHIVVTRA
VTIEIEFCAWSQYLNKTPLQHSHMVVGPLFDIKAEQGAVTAVYLPHFVALQDGMVDSSLF
HVAHFQEYGMVLESPARVERHYAVLESPSFSPIGVLLRMFPAVRQLIPITSITLIYYHLY
LKDVTFHLYLVPNDCTIRKAIDDEEMKFQFVRINKPPPVDALYVGSRYIVSGSKKVEIMP
KELELCYRSPEESQLFSEIYIGHMDSEIMLQIRDKRHMNLVWEALLKPGDIRQALFKVSP
APKDAPSLLHFMDQHREQLVARVTSVDPLLDKLHNLVLSEDSYEAVRAETTNQDKMRKLF
SFSRSWSQACKDQFYQALKETHPHLVMDLSEE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaatctcagtccagacagaaatataacacaaaggtgcctcagcatgaaggtcaa
aaacacttggacactacctacaaaacaaggacacatatgaaggtggagctgaataagcac
acaggcaagcaaaagaagcacttgaagctaacatcttgtacaaaaatatatatgaagaaa
ggaaaaaagactctttacccgacacagtcacttaaaagggagaatttgttccaaaatttc
acaaatctactactcttccaaaaattgtgtacaagaggctcagagaacttggtcaggaaa
agctggcatccttgtgtaccagaagaaggaggacatatgattgagatccaagacttattt
ggcccaaacataggtatccaaaaagggcctcaattagtcataatagagggggctgctgga
gttgggaagtcagtgctggccatgcaggtgaggagagcctggaaggaaggtcagctctac
agggatcgcttccagcatgtcttcttcttcagctgcagagagctggcccagggcaagcag
ctgagtctggctgagctcatagcacaaggccaggaagtgcctatatctcccatcattcag
atcctgtctcaccccgagaagctgctcttcatcctggatggcatagatgagccagcatgg
ttcttggaggagcagaatactgagttatgtttgcactggagtcaagttcagcctgtgcac
acactgctaggaagtttgctggggaaatccatccttcctgaggcttccttcctactcaca
gctcggacaacagatatacagaacttcattccctccttggggcatccatgtcagatagaa
gtgctaggattcattgagtttgaacgggtagaatatttctacacatattttgcatctctc
tcagatgcaattactgcttttgaattggttggatctaacccagtgctcctgaccctgtgt
gaggtcccctgggtgtgctggctggtctgcacttgcctaaaaaagcagacggatcaaggt
ggagacctcttactgacctcacagaccaccacagctctctgcctgaaatacctttccctg
ataatcccaggtaagcacatggggacacagctcagagccctttgctcactggctgctcag
gggatctgccaaagaaggaccctgttcagtgaaagcgacctccgtaaccaagggtttgca
gaggatgccattgtcactttcctggagattggtgttcttcaaaagcagaccagcactctg
agatacagctttgtccatttgtgtttccaggagttctttgcagcgatttcctacatcttg
gaggatagtgaggaaaaacatggtgatatggaagatgacagaattgtggaaaccttggta
gaacgatatggaagtcagaacctgtttgagacacccactgtgcgctttctatttggtctt
ttgagtaaagagggattgaaagaaatggaaaagttcttttcatgcagccttcctgggaag
acaaagttgaagctgctaaggcacatcctagcaaaatcccaaccctatcaaccaccatgt
ctgggtttgctccactgtctgtatgaaaatcaggaaaaggagctcctgacacatgtgatg
catgatcttcaaggaacaatagtgcctggcccaaatgacattgcacacacagtgttccag
acaaaggagaagcacctggtgatacagacagacatggagctcatggtggtcactttctgc
attcagttctgctgtcatgtgaggagtctccagctgaaaaggaaaggacagcatgaacat
aagttaacagctccaagggtggtcctgtgcagatggaccccaatcactgatgccagttgg
aagattctcttctacaatctaaaatttaccagaaatctggaggagctggacctcagtggg
aatccactgagctactctgcagtgcaaagtctctgtacaactctgagccttcctgactgt
caattaaagaccttgtggcttgttgaatgtggcctcacaaccacatactgttcactcctg
gcctcagtgctcagtgtcaactcaagcctgactgagctagacctgcagctgaatgacctg
ggtgatgatggtgtaagactgttgtgtgacgggctcaggaatcctgcctgcaacctcagc
atcctgtggctggaccaggcctctcttagtgaccaagtgattacagagctcaggaccctg
gaggcaaggaatccaaagttgctcatctccagcacatggaaaccacatgtgatggtccct
actaagaacatggataaagaagaagtgggtgatagcccaacctcattcaagaagaagaca
caagagtcaggagacaaacccctggaatctctggggactgaggatgacttctggggacct
atgggacctgtggctactgaggtggttgacagagagaggaacatgtacagagttcaattg
cccatggctggttcctaccactgtcccagcacaggactccatattgtggtgacaagggca
gtgacaattgagattgaattctgtgcctggagccaatacctgaacaagactcccttgcaa
cacagtcacatggtggttggacctctgtttgacatcaaggctgagcaaggagctgtgact
gcagtgtacctccctcattttgtggctctccaagatggaatggtggacagctccttgttc
catgttgcccactttcaagaatatggaatggtcctagaaagcccagcaagggtggaacgg
cattatgcagtactggaaagcccaagcttctccccaataggagttctactaagaatgttt
cctgctgtcagacaactcatccctatcacttcaatcacactgatctactatcacctctat
ctcaaggacgtcacctttcacctttacctggtccccaatgactgcactattcggaaggcc
attgatgatgaagaaatgaagtttcagtttgtgcgcataaacaagccacccccagtggat
gctctttatgttggttcccgctatatcgtgtctggctccaaaaaggtggaaattatgcca
aaggaactggagctctgctaccgaagccctgaggaatctcagctcttctctgagatctac
attggacacatggattcagagattatgttgcaaattagagacaagaggcatatgaatctc
gtatgggaggccttgctgaaaccaggagacatcagacaagcactattcaaagtttctcca
gcccccaaagatgctccttccttgctacacttcatggaccagcatcgggagcagttggtg
gcccgagtgacatcagtggatcctctcttggacaagcttcataatctggtgctgagtgaa
gactcctatgaggcagtgcgggctgagactacaaaccaagacaagatgaggaagctcttc
agcttcagccgatcctggagtcaagcctgcaaagaccaattctaccaagctctgaaggag
acccatcctcacctggtcatggacctctctgaggagtaa
DBGET
integrated database retrieval system
