KEGG   Arvicanthis niloticus (African grass rat): 117711353
Entry
117711353         CDS       T08817                                 
Symbol
Aff4
Name
(RefSeq) LOW QUALITY PROTEIN: AF4/FMR2 family member 4
  KO
K15185  AF4/FMR2 family member 4
Organism
anu  Arvicanthis niloticus (African grass rat)
Pathway
anu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:anu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117711353 (Aff4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:anu03021]
    117711353 (Aff4)
Transcription machinery [BR:anu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     117711353 (Aff4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 117711353
NCBI-ProteinID: XP_034362838
LinkDB
Position
6:complement(67798562..67870582)
AA seq 1158 aa
MNREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMKDYIGDRSIPKLVAIPKPAVPTTDEKASPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQ
KRSSGLQSGHSSQRSSAGGSGASSSGQRHDRDSYSSSRKKGQHSSEHSKSRSSSPGKPQA
VSSLSSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHSSQSFPPSLMSKS
SSMLQKPTAYVRPMDGQESVEPKLSSEHYSGQSHGTNVTELKSSSKAHLTKLKIPSRPLD
ASVSGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQSNFGPGEQKRYN
TSAKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSR
DDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNPHK
VSPASSVDSNIPSSQAYKKEGREQGTTSNYTDPGGPKETSSATPGRDSKTIQKGSESGRG
RQKSPAQSDSTTQRRTVGKKQPKKPEKSAAEEPRGGLKIESETPVDMATSMPSSRHKAAT
KGSRKPNIKKESKSSPRPTAEKKKYKSASKSSQKSREIIETDTSSSDSDESESLPPSSQT
PKYPESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKIDLNLLTR
IPGKPYKETEPPKGEKKNVPEKHPREVQKQASEKASNKGKRKHKNDDDNRASESKKPKTE
DKNSSGHKPSSNRESSKQSSTKEKDLLPSPAGPVPSKDSKTEHGSRKRTVSQSSSLKSSS
TSNKENSGSSKNSSSTAKQKKTEGKVSSSSKEAKEKAPNSSSNCPPSTPTPDSSKPRRTK
LAFDDRNYSADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKNAQESKS
PFPMYSDTVELIKYTMKLKNYLAPDATAADKRLTVLCLRCQSLLYLRLFKLKKENALKYS
KTLTEHLKNSYSNSQAPSPGLGSKAVGMPSPVSPKLSPGNSGSYSSGGSSASASGSSVTI
PQKIHQMAASYVQVTSNFLYATEIWDQAEQLSKEQKEFFAELDKVMGPLIFNASIMTDLA
RYTRQGLHWLRQDAKLIS
NT seq 3477 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagatcggaatgtgctgcgcatgaaagaaagggaaaggcggaatcaggaa
attcagcagggtgaagacgccttcccacctagctctcctctctttgctgagccgtacaaa
gttactagcaaagaagataaattatcaagtcggattcagagtatgcttggaaactacgat
gagatgaaggattacataggagacagatctataccaaagcttgttgcaattcccaagcct
gcagtaccaacaacagacgagaaagcaagcccaaatttttttgaacagagacacggagga
tctcatcagagtagcaaatggactcctgtaggacctgctcccagcacctctcagtctcag
aaacgctcctcgggcttgcagagtggacacagtagccagcggagcagtgcaggtgggagt
ggcgctagcagtagtggccagaggcatgaccgtgactcctacagcagtagcaggaaaaaa
ggccagcacagctcagagcactccaaatctcgatcctcaagccctggaaaaccccaggct
gtttcttcattaagttctagtcattccaggtctcacgggaatgatcaccatagcaaggaa
catcagcgctccaaatcacctcgggaccctgatgccaactgggattctccttctcgcgta
cctttttcaagtgggcaacattcaagtcagtctttcccaccttctttgatgtcaaaatct
agttcaatgttacagaaacccactgcctatgtaaggcccatggatggacaggagtctgtg
gaaccaaagctgtcctctgagcactacagcggccagtctcatggtactaacgtgactgag
ctgaagtccagcagcaaagcacacctcaccaagctgaaaataccttcccgacctttggat
gcatcagtttctggtgatgtaagctgtgtggatgaaatacttaaagagatgacgcattca
tggcctccccctctaacggctattcatacaccatgcaaaacagaaccttccaaatttcct
tttccaactaaggagtctcagcagtctaactttggccctggagaacaaaaaagatacaat
acttctgctaaaacgtcaaatggacaccagtcaaaatctatgttaaaagatgacttaaaa
ctaagcagcagtgaagatagtgatggggaacaggattgtgataagacaatgccaaggagt
acaccaggaagtaactctgaaccttcacaccataacagtgagggagcagataactccagg
gatgactcgagcagccacagtggatctgagagcagctctgggtctgactcagagagcgaa
agcagctccagtgacagtgaggcgaacgagccgtcccagagcgcatctcctgagcctgaa
ccaccaccaacaaacaagtggcaacttgataattggttgaacaaagtgaacccacataaa
gtatctccagcttcctctgtagacagcaacatcccatcatctcaagcctacaagaaagaa
ggccgggaacagggcacaaccagtaactacacagatccagggggcccgaaagaaacgagc
tctgccaccccaggacgagactctaaaaccatccaaaagggatcagaaagtggccgtggg
aggcagaagtctcctgcacagagtgacagcaccacacagaggagaactgtcggcaaaaaa
caacccaaaaaacctgagaagtcagctgccgaagagcctcgaggaggcctgaagatagaa
agtgagactcctgtagacatggctaccagcatgccttctagcagacacaaagcagccacc
aagggctcacggaaacctaacatcaaaaaggagtcgaaatcttcccctcgacctacagca
gagaaaaagaaatataagtcagcaagtaaatcgtcccagaaatctcgggaaatcatagaa
acagatacctcgtcctcagattcagatgagagtgagagcctccctccctcctcacagact
cctaagtaccctgaaagcaataggactcctgtcaaaccctcctcagtggaggaagaagat
agcttttttcggcaacgcatgttctctcctatggaagagaaggagctcctttccccactc
agtgagcctgatgacaggtatccacttattgtgaagattgacctgaatcttttgactaga
atacccgggaagccttacaaagaaacagagccacccaagggggaaaagaaaaatgttcca
gaaaaacacccgagagaggtacagaagcaagcctcagaaaaagcttccaacaaaggcaag
aggaaacacaagaatgatgatgataaccgagccagtgagagcaaaaaacccaaaacggag
gacaagaactcatcaggccacaagccatccagcaatagagagtcatctaagcagagtagt
acaaaagaaaaggatttgctgccttcacctgctgggcctgttccttcaaaagattcaaaa
acagagcatggctctcggaagaggactgtgagtcagtcgtcgtccttaaagtctagcagt
accagtaacaaagagaacagtggtagcagcaagaacagctcctccacggcaaagcagaag
aagactgaagggaaggtttccagcagctccaaagaggccaaggagaaggctccaaatagc
tcctctaattgtcctccgtccacaccaactcctgattcctcaaagcctcggagaacaaag
cttgcctttgatgacagaaattattcagcagaccattatttacaagaagcaaaaaaactc
aaacacaatgcagatgctttgtctgataggtttgagaaagccgtgtactaccttgatgct
gtagtgtctttcattgagtgtgggaatgcattagagaagaacgctcaggaatccaagtcc
ccattccctatgtactcagacacggtggagctcattaaatacactatgaaactaaagaat
tatttggcaccagatgctacagctgcagacaagagactcacagtactttgcctgagatgc
cagtccttgttgtacctgaggctgttcaaactgaagaaggagaacgctctgaagtactcc
aagacgctaactgagcacctgaagaattcttacagtaattctcaagcgccttcacctggc
ttggggagcaaagctgttgggatgccctcccctgtttctccaaagctgtcaccaggcaat
tctggaagttactcttctgggggaagtagtgcttcagcaagtggctcttcggtgaccatt
ccacagaaaatccaccagatggcagcaagctacgtccaggttacatccaacttcctctat
gccacagaaatttgggaccaagctgaacagctttccaaagaacagaaagaattctttgct
gaactggacaaagtgatgggccctctcatctttaatgcaagcatcatgacagatctggct
cgttacacccggcagggactacattggcttcggcaggatgccaagctgatatcttga

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