Arvicanthis niloticus (African grass rat): 117712912
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Entry
117712912 CDS
T08817
Symbol
Npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04975
Fat digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
117712912 (Npc1l1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
anu02000
]
117712912 (Npc1l1)
Transporters [BR:
anu02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
117712912 (Npc1l1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NPC1_N
NPC1_MLD
Sterol-sensing
Patched
MMPL
Folate_rec
DUF6196
ACR_tran
Motif
Other DBs
NCBI-GeneID:
117712912
NCBI-ProteinID:
XP_034365036
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All DBs
Position
7:34542411..34560348
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AA seq
1333 aa
AA seq
DB search
MAAAWQGWLFWALLLNSAQGELYTPIHQAGFCTFYEECGKNPELSGGLTSLSNVSCLSNT
PARHVTGDQLTLLQRICPRLYNGTNTTFACCSTKQLLALESSMSITKALLTRCPACSENF
VSLHCHNTCSPDQSLFINVTRVVERGAGQPPAVVAYEAFYQRSFAEKAYESCSRVRIPAA
ASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQPVADGMQPLNGKI
TPCNESQGEDSAVCSCQDCAASCPVIPQPPALRPSFYMGRMPGWLALIIIFTGVFVLFSA
VLVYLRVVSNRNKNKTAGSQKASNLPLKHRLSPHTVLGRFFQSWGTRVASWPLTVLALSF
IVVIALSVGLTFIELTTNPVELWSAPKSQARKEKAFHDEHFGPFFRTNQIFVTAKNRSSY
KYDSLLLGPKNFSGILSLDSLLELLELQERLRHLQVWSQEAQRNISLQDICYAPLKPYNT
SLSDCCVNSLLQYFQNNRTLLLLTANQTLNSQTSLVDWKDHFLYCANAPLTYKDGTALAL
SCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNNYPADDPRMAQAKLWEEAFLKEM
ESFQRSTVDKFQVAFSAERSLEDEINRTTIQDLPVFAISYIIIFLYISLALGSYSRWNRV
AVESKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLE
YQRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAI
IFDFLLQMTAFVALLSLDSKRQEASRPDILCCLSSRKLPPPKQKEGLLLRFFRKIYAPFL
LHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQELALPKDSYLIDYFLFLNRYLEVGPPV
YFDTTSGYNFSSEAGMNGICSSAGCESFSLTQKIQYASEFPNQSYIAIAASSWVDDFIDW
LTPSSSCCRLYARGPHKDEFCPSTDTSFNCFKTCVNRTLGPVRPTVEQFHKYLPWFLNDL
PNIRCPKGGLAAYRTAVNLSSDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANITAE
LRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDMRSGI
LNLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHLTRSFAVSTKPTRLE
RAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLMITLLGLLHGLVFLP
VVLSYLGPDVNQALVLEEKLATEAAVASEPSCPQYPFPADANTNDYVNYGFNAEFTSGAN
ADSSSVNQSDQRF
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcctggcagggatggctgttctgggccctgctcctgaattcggcccagggt
gagctatacacacccattcaccaagctggcttctgcaccttttatgaagagtgtgggaag
aacccagagctgtctggaggcctcacatcactatccaatgtatcctgcctgtctaatacc
ccggcccgccatgtcacaggtgaccaactgactcttctccagcgcatctgtccccgccta
tacaatggcaccaataccacctttgcctgttgctctaccaagcagctgttggcattagaa
agtagcatgtctatcaccaaggccctcctcacacgctgcccggcctgctctgaaaatttt
gtgagcttacactgccataacacctgcagccctgaccagagcctcttcatcaatgtcacc
cgtgtggttgagcggggtgccggtcagcctcctgctgtggtggcctatgaggccttttat
caacgcagcttcgcagagaaggcctacgagtcctgtagccgggttcgcatccctgcagct
gcctcactggctgtgggtagcatgtgtggagtgtacggctctgccctttgcaatgctcag
cgttggctcaacttccaaggagacacagggaatggcctggctcctctggacatcaccttc
cacctcttggagcctggccagcccgtggcagatgggatgcagccactgaatgggaagatc
acaccctgcaacgagtcccagggtgaagattcggcagtctgctcctgccaggactgtgca
gcgtcctgccctgtcatccctcaacccccggccttgcgcccttccttctacatgggtcga
atgcctggctggctggctctcatcatcatcttcactggtgtctttgtgttgttctctgct
gtccttgtgtacctccgagtggtttccaacaggaacaagaacaagacagcaggctcccag
aaagcctccaacctccctcttaagcacagactctcacctcatactgtccttggccggttc
ttccagagctggggcacaagggtggcctcatggccactcaccgtcttggcactgtccttc
atagttgtgatagccttatcagtaggcctgacatttatagagctcaccacaaaccctgta
gaactgtggtcagctcccaaaagccaagcccggaaagagaaggctttccatgacgaacat
tttggccccttcttccgaaccaaccagatttttgtgacagctaagaacaggtccagctac
aagtacgactccctactgctagggcccaagaacttcagtgggatcctgtccctggactcg
ctcctggagctgctggagctacaagagaggcttcgccacttgcaagtgtggtcccaggag
gcacagcgcaacatctccctacaggacatctgctatgcccccctcaaaccgtataacacc
agcctctctgactgctgtgttaacagcctccttcagtacttccagaacaaccgcacgctc
ctgttgctcacggccaaccagactctgaatagccagacctccctggtggactggaaggat
catttcctctactgtgcaaatgcccctctcacgtacaaagatggcacggctctggctctg
agctgcatagctgactacggggcccctgtcttcccctttcttgctgttggaggataccaa
gggacggactactccgaggcagaagcgctgatcataaccttctctctcaataactaccct
gctgatgatccccgaatggcccaggccaagctctgggaggaggctttcttgaaggaaatg
gaatcattccagaggagcacagttgacaagttccaggtcgcgttttcagctgagcgctct
ctggaggacgagatcaaccgcaccaccatccaggatctgcctgtctttgccatcagctac
attatcatcttcctgtacatctccctggccctgggcagctactccagatggaaccgagta
gcggtggagtctaaggctactctgggcctaggtggggtggctgttgtgctgggagcagtc
gtggctgccatgggcttctactcctacctgggtgtcccctcctctctggttatcatccaa
gtggtacctttcctggtgctggctgtgggagctgacaacatcttcatctttgttcttgag
taccagaggctgcctaggatgccaggggaacagcgagaggctcacattggccgtaccctg
ggcagcgtggcccccagtatgctgctgtgcagcctctctgaggccatctgcttctttcta
ggggccctgacccccatgccagctgtgaggaccttcgccttgacctctggcttagcaatc
atcttcgacttcctactccagatgaccgcctttgtggccctgctctccctggatagcaag
aggcaggaggcctctcgccccgacatcttatgctgcctttcaagccggaagctgccccca
cctaaacaaaaagaaggcctcttactccgcttcttccggaaaatatacgctcccttccta
ctacatagattcatccgccctgttgtgctgctgctgtttctggtcctgtttggagcaaac
ctctacttaatgtgcaacatcagcgtggggctggaccaggagctggctttgcccaaggac
tcctacctgatagactacttcctctttctgaaccgatatcttgaagtggggcctccagtg
tactttgacaccacctcgggctacaacttctctagtgaggcaggcatgaatggcatctgc
tctagtgcaggctgtgagagcttctccctaacccagaaaatccagtatgccagtgaattc
cctaaccagtcttacatagctattgctgcatcctcctgggtagatgacttcatcgactgg
ctgaccccatcctcctcctgctgccgcctttatgcccgtggcccccataaggatgagttc
tgtccctcaacggatacttccttcaactgtttcaaaacctgcgtgaaccgcactctgggt
cccgtgaggcccacagtagaacagtttcataagtatctgccctggttcctgaatgatctg
cctaacatcaggtgtcccaaagggggtctagcagcgtatagaactgctgtgaatttgagc
tcggatggccaggttatagcttcccagttcatggcctaccacaagcccttaaggaactca
caggactttacagaagctctccgggcgtcccggttgctagcagccaacatcacagctgaa
ctacggaaggtgcctgggacagatccaaactttgaggtcttcccttacacgatctccaat
gtgttctaccagcaatacctgacagttcttcctgagggaatcttcactcttgctctctgc
tttgtgcccacctttgttgtctgctacctcctactgggcctggacatgcgctcaggcatc
ctcaacctgctctccatcattatgatcctcgtggacaccatcggcctcatggctgtgtgg
ggtatcagctacaatgctgtgtccctcatcaaccttgttacggcagtgggcatgtctgtg
gagtttgtgtcccacctcacccggtcctttgctgtaagcaccaagcctacacggctggag
agggccaaagatgctactatcttcatgggcagtgcggtgtttgctggagtggccatgacc
aacttcccaggcatcctcatcttgggctttgctcaggcccagcttatacagattttcttc
ttccgcctcaacctcatgatcaccttgctgggtctgctgcatggcctggtctttctgcct
gttgtcctcagctacctggggccagatgttaaccaagctctggtactggaggagaaacta
gccaccgaggcagcggtggcctcagagccttcttgcccacagtaccccttccccgctgat
gcaaacaccaatgactatgttaactacggctttaatgcagaattcacctccggagctaat
gctgatagcagctcagtgaaccaaagtgaccaaaggttctaa
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