Arvicanthis niloticus (African grass rat): 117713690
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Entry
117713690 CDS
T08817
Symbol
Ldlr
Name
(RefSeq) low-density lipoprotein receptor isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04144
Endocytosis
anu04913
Ovarian steroidogenesis
anu04925
Aldosterone synthesis and secretion
anu04927
Cortisol synthesis and secretion
anu04934
Cushing syndrome
anu04976
Bile secretion
anu04979
Cholesterol metabolism
anu05145
Toxoplasmosis
anu05160
Hepatitis C
anu05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117713690 (Ldlr)
09150 Organismal Systems
09152 Endocrine system
04913 Ovarian steroidogenesis
117713690 (Ldlr)
04925 Aldosterone synthesis and secretion
117713690 (Ldlr)
04927 Cortisol synthesis and secretion
117713690 (Ldlr)
09154 Digestive system
04976 Bile secretion
117713690 (Ldlr)
04979 Cholesterol metabolism
117713690 (Ldlr)
09160 Human Diseases
09172 Infectious disease: viral
05160 Hepatitis C
117713690 (Ldlr)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
117713690 (Ldlr)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
117713690 (Ldlr)
09167 Endocrine and metabolic disease
04934 Cushing syndrome
117713690 (Ldlr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117713690 (Ldlr)
Membrane trafficking [BR:
anu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117713690 (Ldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
hEGF
Motif
Other DBs
NCBI-GeneID:
117713690
NCBI-ProteinID:
XP_034365998
EnsemblRapid:
ENSANLG00005007713
LinkDB
All DBs
Position
8:complement(86350899..86377444)
Genome browser
AA seq
869 aa
AA seq
DB search
MSTADLMLRWAIALLLAAAGVAAEDSCSRKEFQCRNGQCIASKWVCDGVPECTDGSDESP
ETCMSVTCQSNEFSCGGRVSRCIPDSWRCDGRGDCENDSDEQGCPPKTCSLDEFHCQDGK
CISQQFVCDGDRDCLDGSDEAHCEASTCGPAHFRCNSSTCIPSLWACDSDADCEDGSDEW
PQNCGGRDTASERVSGPCSSLEFHCGSSECIHRNWVCDGTADCKDKSDEENCAAVTCRPD
EFQCTDGSCIHGSRQCDGEHDCKDMSDELGCINVTRCDGPSKFRCHSGECISLDKVCDST
RDCRDWSDEPLKECKTNECLDNNGGCSHICKDLKIGSECLCPSGFRLVDDHRCEDIDECQ
EPDTCSQLCVNLEGSYKCECRAGFHMDPHTRVCKAVGSVGYLLFTNRHEVRKMTLDRSEY
TSLISNLKNVVALDTEVANNRIYWSDLSQKKIYSAPMDQAPSLSYDTIISGDLHAPDGLA
VDWIHGNIYWTDSVPGSVSVADTKGIKRKTLFQETGSRPRAIVVDPVHGFMYWTDWGTPA
KIKKGGLNGVDIYSLVTEDIQWPNGITLDLLSGRLYWVDSKLHSISSIDVSGGNRKTVLE
DENRLAHPFSLAIYEDKVYWTDVINEAIFSANRLTGADVNLIAENLLSPEDIVLFHNITQ
PRGVNWCEITALPNGGCQYLCLPAPQISAHSPKFTCACPDGTLLAKDMRTCLTEVDTVLT
TQGTSAIGSAVTASAAGLPKHKEDPSATSTSGQPVDTPGLSTVESVTMSHQVQGDMAGRG
NEEQPHGVGFLSIFLPIALVVLLVFGAVLLWRHWRLRNINSINFDNPVYQKTTEDELHIC
RSQDGYTYPSVSVHFCGGEETSNKLKDRS
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgcggatctgatgctgcgctgggccatcgccctgctcttggctgctgctgga
gttgcagcagaagactcatgtagcaggaaggagttccagtgtagaaatggacaatgcatt
gccagcaagtgggtgtgtgacggcgtccccgagtgcacggatggctccgacgagtccccc
gagacatgcatgtctgtcacctgtcaatccaatgaattcagctgtggaggccgtgtcagc
cgatgcattcctgactcctggagatgtgacggacggggggactgtgaaaatgactcagac
gaacaaggctgtccccccaagacgtgctccctggatgaattccactgccaggatggcaag
tgcatttctcagcagtttgtgtgtgatggagaccgagattgcctggacggctctgacgag
gcccactgcgaggcctccacttgtggccctgcccacttccgttgcaactcatccacatgc
atccccagcctgtgggcctgcgactcggatgcggattgtgaagatggttccgacgagtgg
ccacagaactgcgggggccgagacacagcttccgaacgagttagtggcccctgctcctcc
ctcgagttccactgtggcagtagtgagtgtatccatcgcaactgggtctgtgacggcacg
gccgactgcaaggacaagtcggatgaggaaaactgcgcggcggtcacctgccgacctgat
gaattccagtgtacggatggctcctgcattcacggtagccgccagtgtgacggtgaacat
gactgcaaggacatgagcgacgagctcggctgcatcaacgtgacgcggtgcgatggcccc
agcaagttcaggtgccacagcggggagtgcatcagtttggacaaggtgtgcgactccacc
cgggactgccgagactggtcagatgagcccctcaaggagtgcaagaccaacgagtgtttg
gacaacaatggtggctgttcccacatctgcaaggacctcaagattggctctgagtgcctg
tgtcccagcggcttccggctggtggacgaccaccggtgtgaagatattgacgagtgtcag
gagccggacacctgcagccaactctgtgtgaacctggaaggcagctacaagtgcgagtgc
cgggctggcttccacatggaccctcacaccagggtctgcaaagctgtgggctccgtaggc
tatctgctcttcactaaccgccatgaggtacggaagatgaccctggaccgcagcgagtat
accagcctgatctccaacctaaagaatgtggtggccttggacactgaggtagccaacaac
agaatctattggtccgacttgtcccaaaaaaaaatatacagtgccccgatggaccaggcc
cctagcttgtcctatgacaccatcatcagtggggacctgcatgcccctgacgggctggct
gtagactggatacatggtaatatctactggacggattcagtcccagggagtgtttctgtg
gctgacaccaagggcataaagcggaagacgctgttccaagagacagggtccagacccaga
gccatcgtagtggaccctgtgcatggcttcatgtactggacagattggggaacacctgcc
aagatcaagaaagggggtttgaatggtgtggacatctactcactggtgaccgaggacatc
cagtggccaaatggcatcacactagatcttctaagtggccgtctctattgggttgattcc
aaactccactctatctccagcatcgatgtcagcgggggcaaccggaaaactgttttggag
gatgagaaccggctggcccatcccttctccttggccatctatgaggacaaagtgtattgg
acagatgtcataaacgaagccattttcagtgccaatcgcctcacgggtgcagatgtgaat
ttgatagctgaaaacctcttgtccccggaggacattgtcctgtttcacaacatcacgcag
cctagaggggtgaactggtgtgagataacagccctccccaatggtggttgccagtacctg
tgcctgcctgccccacagataagtgcccactcacccaagttcacctgtgcctgcccagac
ggcacactgctggccaaggacatgaggacctgcctcacagaagtcgacactgtactgacc
acccaggggacatccgccatcgggtctgcagtcaccgcatcagctgctgggctgccaaag
cacaaggaggatccctcagctaccagcacttctgggcagcctgtggacaccccagggctc
agcacagtggagtcggtgacaatgtcccaccaagtccagggtgacatggctggcagaggg
aacgaggagcagccgcatggcgtggggttcttgtccatcttcctccccattgcactggtc
gtcctccttgtcttcggggccgtcctactgtggaggcactggcggctgaggaacatcaac
agcataaactttgacaacccggtgtaccagaagaccacggaggacgaactccacatttgc
cgaagccaggacggctatacctacccctcagtgagtgtgcacttttgtgggggagaggag
acatcgaacaagctgaaggacagaagttag
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