Arvicanthis niloticus (African grass rat): 117716894
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Entry
117716894 CDS
T08817
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1 isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117716894
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117716894
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
117716894
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
hEGF
EGF_3
FXa_inhibition
EGF_MSP1_1
Plasmod_Pvs28
EGF_TEN
EGF_2
Motif
Other DBs
NCBI-GeneID:
117716894
NCBI-ProteinID:
XP_034369883
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All DBs
Position
11:60945057..61182258
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AA seq
1394 aa
AA seq
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MDTKLICLLFFFCLPLLLVSNHTGRIKVVFTPSICKVTCTKGNCQNSCQKGNTTTLISEN
GHAADTLTATNFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIPVLGASMPKLYQHA
QQPGKALGSHVIHSTHTLPLTMTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP
VSQKVKEAQPGQSQVSYQGLPVQKTQTVHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGS
QCGKALPGLSKQEDCCGTVGTSWGFNKCQKCPKKQSYHGYTQMMECLQGYKRVNNTFCQD
INECQLQGVCPNGECLNTMGSYRCSCKMGFGPDPTFSSCVPDPPVISEEKGPCYRLVSPG
RQCMHPLSVHLTKQICCCSVGKAWGPHCEKCPLLGTAAFKEICPGGMGYTVSGVHRRRPI
HQHIGKEAVFVKPKNTQPVAKSTHPPPLPAKEEPVEALTSSREHGPGVAEPKVVTAPPEK
EIPSVDQEKTRLEPGQPQLSPGVSTIHLHPQFPVVVEKTSPPVPVEVAPEASTSSASQVI
APTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYKFSEQQRKCVDIDECAQVQHLC
SQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCREGRCINTAGAFRCEYCDS
GYRMSRRGHCEDIDECLTPSTCPEEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLQPK
VCTNGSCTNLEGSYMCSCHKGYSPTPDHRHCQDIDECQQGNLCMNGQCKNTDGSFRCTCG
QGYQLSAAKDQCEDVDECEHRHLCSHGQCRNTEGSFQCVCNQGYRASVLGDHCEDINECL
EDSSVCQGGDCINTAGSYDCTCPDGFQLNDNKGCQDINECAQPGLCEPHGECLNTQGSFH
CVCEQGFSISADGRTCEDIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQAPQDGQGCVD
VNECELLSGVCGEAFCENVEGSFLCVCADETQEYSPMTGQCRSRVTEDSGVDHQPREEKK
ECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVQGTAEFTEMCPRGKGF
VPTGESSYDTDGENYKDADECLLFGEEICKNGYCLNTQPGYECYCKQGTYYDPVKLQCFD
MDECQDPNSCIDGQCVNTEGSYNCFCTHPMILDASEKRCVQPTESNEQIEETDVYQDLCW
EHLSEEYVCSRPLVGKQTTYTECCCLYGEAWGMQCALCPMKDSDDYAQLCNIPVTGRRRP
YGRDALVDFSEQYGPETDPYFIQDRFLNSFEELQAEECGILNGCENGRCVRVQEGYTCDC
FDGYHLDMAKMTCVDVNECSELNNRMSLCKNAKCINTEGSYKCLCLPGFIPSDKPNYCTP
LNTALNLDRDSDLE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggatactaagctgatatgtttgttgttctttttctgtctgcctctgctcctagtgagt
aaccacactggtcgcatcaaggtggtctttactccgagcatctgtaaagtgacctgcacc
aagggcaactgtcagaacagctgccagaaggggaataccaccactctcattagtgagaac
ggccatgcagccgacaccctgacagccacgaacttccgagtggtaatttgccatcttcca
tgtatgaatggtggccagtgcagttcaagggacaaatgtcaatgccctccaaatttcaca
ggaaagctttgccagatccctgtccttggtgccagtatgcctaaactctaccagcacgcc
cagcagccaggcaaggcattggggagtcacgtcatccattctacacataccttgcctctc
accatgaccagccagcaaggcgtcaaagtgaaatttccccccaacatagtcaatatccat
gtgaaacatcctcccgaggcttctgtccagatacaccaggtttccagaattgatggccca
gtgagccagaaggtgaaagaagctcaaccaggccagtctcaagtctcttaccaagggctg
cccgtccagaagactcagacagtacattccacgtactcccaccagcaggtcattccacac
gtgtatcccgtggccgctaagacacaacttggccgatgcttccaggaaaccattgggtca
cagtgtggcaaagcgctccctggcctttcaaagcaagaggactgctgtgggacagtgggg
acctcctggggctttaacaaatgccagaaatgccccaagaagcaatcctatcatggttat
actcaaatgatggaatgccttcaaggatataaacgggttaacaacaccttttgtcaagat
attaatgaatgtcagctacaaggtgtatgccctaatggtgaatgtttgaataccatggga
agctacagatgctcctgcaagatgggatttgggcctgaccctaccttttcaagttgtgtt
ccggatcccccggtgatctcagaagagaaagggccctgttaccgccttgtcagtcctgga
aggcagtgtatgcaccctctctctgttcatctcaccaagcagatctgctgttgtagtgtg
ggcaaggcctggggcccacattgtgagaaatgtcctctcctgggtacagctgcttttaag
gaaatctgtcctggtggaatgggttatacggtttctggcgttcatagacgcaggccaatc
catcagcatataggtaaagaagctgtatttgtcaagccaaagaacactcaacctgttgct
aaaagtactcatcctccacctctcccagccaaggaagagcctgtggaggccctgacctcc
tcgcgggaacatgggccgggagtggcggagcccaaagtggtaacagcacctcctgagaag
gaaataccctcagtggatcaagagaaaaccagacttgaacctgggcaaccccagctctcc
ccaggggtttcaaccattcatctgcacccgcagtttccagtagtggttgaaaagacatcg
ccccctgtgcctgtggaagtggcacctgaagcttccacatcaagtgccagccaagtgatt
gctcctacgcaagtaacagaaatcaacgaatgtactgtgaacccagacatttgtggagca
ggacactgcatcaacctgccggtgaggtatacctgcatctgctacgagggctacaagttc
agtgaacaacagaggaaatgcgttgacattgatgaatgtgcccaggtccagcacctctgc
tcccagggtcgctgtgagaacacagaggggagtttcctgtgtatttgcccagcagggttt
atggccagtgaggagggtactaactgtatagatgtggatgaatgtctgaggcctgatgtg
tgtagggaaggccgctgcatcaacactgctggggccttccggtgtgaatactgtgacagt
gggtaccggatgtcacggcggggccactgcgaggatattgatgaatgtctgacgccaagc
acttgtcccgaggaacaatgtgtgaactccccaggctcttaccagtgcgtgccctgcaca
gaagggttccggggctggaacggacaatgccttgatgtggacgagtgcctgcagccaaag
gtctgtactaatggctcctgcaccaacctggaaggctcctacatgtgttcctgccacaag
ggctacagccccacaccagaccataggcactgtcaagatattgatgaatgtcaacaaggg
aacctgtgtatgaacgggcagtgcaaaaacaccgacggctccttccggtgtacctgtgga
cagggctatcaactgtcagcagctaaagaccaatgtgaagatgttgatgaatgtgaacac
cggcatctctgctctcatgggcagtgcaggaacacagagggctccttccagtgcgtgtgc
aaccagggttacagagcatctgtgcttggagaccactgtgaggatatcaatgaatgtttg
gaggacagcagtgtctgccagggaggagactgcatcaataccgcggggtcctatgactgc
acatgcccggatggattccagctgaatgacaataagggctgtcaagacattaatgaatgt
gcacaaccaggactctgtgaacctcatggggagtgtctgaacacacaaggctccttccat
tgtgtctgcgaacaggggttctccatctctgcagatggccgtacatgcgaagatattgat
gagtgtgttaacaacactgtgtgtgacagtcacggcttctgtgacaacacagccggctct
ttccgctgcctctgttatcagggctttcaagccccacaggatgggcaagggtgtgtggat
gtgaacgaatgtgagctgctcagtggtgtatgtggggaagctttctgtgaaaacgtggaa
gggtcgttcctgtgtgtgtgtgccgatgagacccaggaatacagccccatgacggggcag
tgtcgatcccgggtcacagaagattcaggtgtggatcatcagcccagagaagagaagaaa
gagtgctattataacctcaatgatgccagtctctgtgataacgtgctggcccccaacgtc
accaaacaagagtgctgctgtacgtcgggtgctggctggggagacaactgtgagatcttc
ccttgcccggtccaggggactgctgagttcacggaaatgtgccctagagggaaaggattt
gtccccactggagaatcctcttacgacaccgatggggagaactacaaagacgctgatgag
tgcctgctgtttggagaggaaatctgcaaaaatggttactgtttgaacactcagcctggg
tatgagtgctactgcaagcaagggacatactatgaccctgtcaaattacagtgttttgat
atggatgaatgtcaagaccctaacagttgtattgatggccagtgtgttaatacagagggc
tcttacaactgcttttgtacccatccaatgatcctggatgcctctgagaagagatgtgtg
caaccaactgaatcaaatgaacaaatagaagagaccgatgtctaccaagatctgtgctgg
gagcatctgagtgaggagtacgtgtgtagccgtcctcttgtaggcaaacagacgacatac
acagagtgctgctgtttgtacggggaagcctggggtatgcaatgtgctctctgccccatg
aaggactcagatgactatgcccagctgtgcaacatccctgtgacagggcggcggcggcca
tatggacgggatgcgttggtggacttcagtgaacagtatggcccagaaacagacccttac
ttcattcaggatcgctttctaaacagctttgaggagctacaggctgaggagtgtggcatc
ctcaacggctgtgaaaatggccgctgtgtgagggtccaggagggttacacttgtgactgc
tttgatggatatcatctggatatggccaagatgacctgtgtcgatgtaaatgaatgcagc
gagctgaataaccggatgtctctctgcaagaacgccaagtgcattaacacagaaggctcc
tacaaatgcttgtgtctgccaggcttcataccatctgacaagcccaactactgtacgcca
ctgaacaccgctttgaatttagacagagacagtgacctggagtaa
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