KEGG   Arvicanthis niloticus (African grass rat): 117718458
Entry
117718458         CDS       T08817                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC3-like isoform X1
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
anu  Arvicanthis niloticus (African grass rat)
Pathway
anu03250  Viral life cycle - HIV-1
anu05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:anu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117718458
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    117718458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:anu03019]
    117718458
Messenger RNA biogenesis [BR:anu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117718458
SSDB
Motif
Pfam: NAD2 APOBEC2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 Toxin-deaminase dCMP_cyt_deam_1 MafB19-deam Phage_holin_T XOO_2897-deam
Other DBs
NCBI-GeneID: 117718458
NCBI-ProteinID: XP_034371912
LinkDB
Position
13:54938270..54954507
AA seq 421 aa
MQPQRLGPRAEMEPVCPGCSRHRPDSPTSACRSPKPIEKLSQGAFCFHFNNLHYAKDRKD
AFLCYEVNRKNGCDSPVPLYQGVFKKEGQMHTELCFIYWFHEQVLKGLSPREEFKITWYM
SWSPCIKCTDPVTGFLAKHPNLSLAIFSSRLYYPKTPNYDKKLRRLVQEGAQVAIMDLPE
FKKCWNKFVYNDGQPFRPWKRLCENFRFQNSDLQEILSSLLRDEVFSLQFNNSHWVQPIQ
HQPGQLHYYRRKSYLCYQLEWSNGQESLKGYLLSKKGKPHAEILFLDKIRFMKLSQVRIT
CYFTWSPCPNCARQLAAFKKNHPDIILRIYTSRLYFYWRKKFQKGLCSLWRSGIQVDVMD
LPQFTDCWTNFVSPQRPFIPWNKLEKNSWRIKRRLRKIKESWGLQDLVNDFKNLHLGPPL
P
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaaccccagcgcctggggcccagagctgagatggaaccagtctgccctggctgcagc
cgtcatagacccgattcaccgaccagtgcctgcagaagcccaaagcctatagagaagtta
tctcaaggagcattctgcttccattttaataacctacactatgccaaggaccgaaaagat
gccttcttgtgctatgaagtgaatagaaagaacggctgcgattcacctgtccccctttac
caaggggtctttaagaaagagggccagatgcacactgaactttgctttatatactggttc
catgaacaagtactgaaagggctgtccccgagggaagagttcaagatcacctggtatatg
tcctggagcccttgcatcaagtgtactgatccggtgaccggcttcctggccaaacacccc
aacctgagcctggccatcttcagctcccgcctctactacccaaagactccgaactacgat
aagaagcttcgaaggcttgttcaggaaggagcccaggtggctatcatggacctaccagaa
tttaaaaagtgttggaacaagtttgtgtacaatgatggccagccattcaggccttggaag
agactgtgtgaaaattttaggttccagaattccgatcttcaggagattctcagtagtctg
ctaagagacgaggtgttttccctgcagtttaacaacagccactgggtccagccaatccag
catcagccaggccagcttcattactaccgcaggaagtcctacctatgctaccagctggag
tggtccaatggccaagagtcactcaaaggctacctgctaagcaagaaaggtaaaccgcat
gcggaaatcctcttccttgataagatacggttcatgaagctgagccaagtgagaatcacc
tgctacttcacctggagcccctgcccgaactgtgcccggcaactggctgcattcaaaaag
aatcatccagatataattctgcggatctacacctcccgcctgtatttctactggaggaag
aagttccagaaggggttgtgttctctgtggcgatcagggatccaggtggacgtcatggat
ctcccacagtttactgactgctggacaaacttcgtgagcccgcaaaggccatttattcca
tggaataaactggagaaaaacagctggcgcataaaaaggcggctccggaagatcaaggag
tcctggggcctgcaagatttggtgaatgactttaaaaatttacatcttggaccgccgttg
ccttga

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