Anaerotignum sp. MB30-C6: RBQ60_05135
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Entry
RBQ60_05135 CDS
T09679
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anv
Anaerotignum sp. MB30-C6
Pathway
anv03030
DNA replication
anv03410
Base excision repair
anv03420
Nucleotide excision repair
anv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBQ60_05135 (ligA)
03410 Base excision repair
RBQ60_05135 (ligA)
03420 Nucleotide excision repair
RBQ60_05135 (ligA)
03430 Mismatch repair
RBQ60_05135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anv03032
]
RBQ60_05135 (ligA)
03400 DNA repair and recombination proteins [BR:
anv03400
]
RBQ60_05135 (ligA)
Enzymes [BR:
anv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBQ60_05135 (ligA)
DNA replication proteins [BR:
anv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBQ60_05135 (ligA)
DNA repair and recombination proteins [BR:
anv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBQ60_05135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBQ60_05135 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBQ60_05135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBQ60_05135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
HHH
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WMI82121
UniProt:
A0AA51CF45
LinkDB
All DBs
Position
974271..976232
Genome browser
AA seq
653 aa
AA seq
DB search
MVKRIKELTSLLNEASKAYYQKDSEMMSNQEYDRLYDELVALEKESGIVLANSPTQRVGY
TVLSNLKKVKHDSPILSLDKTKETDKLKSFLGDKEGILSWKLDGLTIVLTYENGELVQAI
TRGNGEIGEDVTHNAKVFANVPLHIGFKGSLVLRGEGVISYSEFRRINKELAEEEAYKNP
RNLCSGTVRQLNSEIAAKRRVQFFAFTVVKAEGAERSDSKAENLQWLKNLGFDVVEHRLI
SAETAEQEVEWFRDHVQENDIASDGLVLTFDSISYSGSLGRTAKFPKDSIAFKWADEMAE
TILREVEWNTSRTGLMNPIAIFDPVELEGSTVSRASVHNVSILKELKLGIGDRIKVYKAN
MIIPQISENLTGSSTVEIPEKCLVCGGETQIKKQRDGEALYCTNPECAAQRIQRLNHFVS
RDAMNIEGLSEETLKKFLEKGFIDQYPDIFRLNRFEKEIKSLEGFGEKSYQNLINSIEKS
RDVELPNFIYALGIDQVGLRNAKLLCGKFEYDIEGIKRATEDELQSIDGFGAVIAHSISH
YFKDDSHISLLEDVLEYLRIKIPIITEAKDSLVKGLTFVVTGDVTKFSNRKALTQAIEAQ
GGKITGSVTKKTDYLINNDVDSSSSKNGKAKELGIPIISEDDFILKFNITPAE
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaacgaataaaggaattgacttctcttttgaacgaggccagtaaggcttattac
caaaaggattcagaaatgatgtccaaccaagaatatgaccgtttatatgatgagttggtg
gcattagaaaaagaaagtggcattgttttggcaaatagccctacccaaagggttggttat
actgttttaagcaatttgaaaaaagtaaagcacgacagccccatactatccttggataaa
acaaaagagacagataagctaaaaagctttttaggtgataaagagggcattctttcatgg
aaactggatggcttaactattgtgttaacctatgaaaatggggagttggtgcaggcaatt
acccgtgggaatggggagattggggaggatgttacccataacgccaaggtttttgccaat
gtgcctttacacattggcttcaaaggaagcttggttcttagaggggaaggggtcatttcc
tattcagagtttcgccgaattaacaaggagttggctgaggaagaagcctataaaaacccc
agaaacctttgcagtggtaccgttcgtcagcttaacagcgaaattgccgccaaaagacgt
gtgcagttctttgctttcacagtagtgaaagcagagggggcagaacgttccgacagtaag
gcagaaaacttacagtggcttaaaaatttgggctttgacgtagtggagcatagattaatt
tcggcggaaaccgcagagcaagaagtagagtggtttcgtgaccacgtgcaggaaaatgac
attgcttccgatggccttgtgttaacctttgatagcatatcttatagcgggagcctcggt
agaacagcaaaattccccaaggactccattgcttttaaatgggcggatgaaatggcggag
accatacttcgtgaagttgaatggaatacttcaaggacgggtttgatgaaccccattgcc
atatttgaccccgttgagttggaagggtctacggtgagccgtgccagtgtgcataacgtg
agtattttgaaagaactaaaactaggtattggcgatcggattaaggtttataaagcgaat
atgattattcctcaaatttcggagaacctgacggggtcgtcaacggttgaaattcctgaa
aagtgtttagtttgcggtggcgaaacccaaataaaaaagcagcgggatggagaggcgtta
tactgtacaaaccctgaatgtgccgcccaaagaattcaaagactcaaccactttgtttcc
agagacgccatgaatatagagggcctttctgaagaaaccctaaagaagtttctagaaaaa
ggctttatagatcaataccccgatatttttcgcttaaatagatttgaaaaagaaattaag
agcttagaaggctttggggaaaaatcctatcaaaacttaataaactccattgaaaaatca
agggatgttgagttacccaattttatttatgccttaggcattgatcaggtgggattgcgt
aatgcaaaacttctctgtggtaagtttgaatatgatattgagggaataaaaagagctaca
gaagatgagctacaatcaatcgacggctttggtgcagtaatcgctcatagcattagccac
tattttaaagacgattcccacatttccttattagaggatgttttggaatatttacgaata
aaaatacccattataacggaagccaaggattcccttgtcaaaggtctaacttttgtagtg
actggggacgttaccaagttttccaaccgaaaggcccttacccaagctatcgaggcgcaa
ggggggaagataacaggaagtgtaacgaaaaaaaccgattacttgattaacaatgacgtt
gattcttcatcttccaaaaatggaaaggcaaaagagttaggcattcccattattagtgaa
gatgactttattctaaagtttaatattactcctgcagagtag
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