KEGG   Anaerotignum sp. MB30-C6: RBQ60_05135
Entry
RBQ60_05135       CDS       T09679                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
anv  Anaerotignum sp. MB30-C6
Pathway
anv03030  DNA replication
anv03410  Base excision repair
anv03420  Nucleotide excision repair
anv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:anv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RBQ60_05135 (ligA)
   03410 Base excision repair
    RBQ60_05135 (ligA)
   03420 Nucleotide excision repair
    RBQ60_05135 (ligA)
   03430 Mismatch repair
    RBQ60_05135 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:anv03032]
    RBQ60_05135 (ligA)
   03400 DNA repair and recombination proteins [BR:anv03400]
    RBQ60_05135 (ligA)
Enzymes [BR:anv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RBQ60_05135 (ligA)
DNA replication proteins [BR:anv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RBQ60_05135 (ligA)
DNA repair and recombination proteins [BR:anv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RBQ60_05135 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RBQ60_05135 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RBQ60_05135 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RBQ60_05135 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT BRCT_2 Nlig-Ia DNA_ligase_ZBD HHH Zn_ribbon_Top1
Other DBs
NCBI-ProteinID: WMI82121
UniProt: A0AA51CF45
LinkDB
Position
974271..976232
AA seq 653 aa
MVKRIKELTSLLNEASKAYYQKDSEMMSNQEYDRLYDELVALEKESGIVLANSPTQRVGY
TVLSNLKKVKHDSPILSLDKTKETDKLKSFLGDKEGILSWKLDGLTIVLTYENGELVQAI
TRGNGEIGEDVTHNAKVFANVPLHIGFKGSLVLRGEGVISYSEFRRINKELAEEEAYKNP
RNLCSGTVRQLNSEIAAKRRVQFFAFTVVKAEGAERSDSKAENLQWLKNLGFDVVEHRLI
SAETAEQEVEWFRDHVQENDIASDGLVLTFDSISYSGSLGRTAKFPKDSIAFKWADEMAE
TILREVEWNTSRTGLMNPIAIFDPVELEGSTVSRASVHNVSILKELKLGIGDRIKVYKAN
MIIPQISENLTGSSTVEIPEKCLVCGGETQIKKQRDGEALYCTNPECAAQRIQRLNHFVS
RDAMNIEGLSEETLKKFLEKGFIDQYPDIFRLNRFEKEIKSLEGFGEKSYQNLINSIEKS
RDVELPNFIYALGIDQVGLRNAKLLCGKFEYDIEGIKRATEDELQSIDGFGAVIAHSISH
YFKDDSHISLLEDVLEYLRIKIPIITEAKDSLVKGLTFVVTGDVTKFSNRKALTQAIEAQ
GGKITGSVTKKTDYLINNDVDSSSSKNGKAKELGIPIISEDDFILKFNITPAE
NT seq 1962 nt   +upstreamnt  +downstreamnt
atggtgaaacgaataaaggaattgacttctcttttgaacgaggccagtaaggcttattac
caaaaggattcagaaatgatgtccaaccaagaatatgaccgtttatatgatgagttggtg
gcattagaaaaagaaagtggcattgttttggcaaatagccctacccaaagggttggttat
actgttttaagcaatttgaaaaaagtaaagcacgacagccccatactatccttggataaa
acaaaagagacagataagctaaaaagctttttaggtgataaagagggcattctttcatgg
aaactggatggcttaactattgtgttaacctatgaaaatggggagttggtgcaggcaatt
acccgtgggaatggggagattggggaggatgttacccataacgccaaggtttttgccaat
gtgcctttacacattggcttcaaaggaagcttggttcttagaggggaaggggtcatttcc
tattcagagtttcgccgaattaacaaggagttggctgaggaagaagcctataaaaacccc
agaaacctttgcagtggtaccgttcgtcagcttaacagcgaaattgccgccaaaagacgt
gtgcagttctttgctttcacagtagtgaaagcagagggggcagaacgttccgacagtaag
gcagaaaacttacagtggcttaaaaatttgggctttgacgtagtggagcatagattaatt
tcggcggaaaccgcagagcaagaagtagagtggtttcgtgaccacgtgcaggaaaatgac
attgcttccgatggccttgtgttaacctttgatagcatatcttatagcgggagcctcggt
agaacagcaaaattccccaaggactccattgcttttaaatgggcggatgaaatggcggag
accatacttcgtgaagttgaatggaatacttcaaggacgggtttgatgaaccccattgcc
atatttgaccccgttgagttggaagggtctacggtgagccgtgccagtgtgcataacgtg
agtattttgaaagaactaaaactaggtattggcgatcggattaaggtttataaagcgaat
atgattattcctcaaatttcggagaacctgacggggtcgtcaacggttgaaattcctgaa
aagtgtttagtttgcggtggcgaaacccaaataaaaaagcagcgggatggagaggcgtta
tactgtacaaaccctgaatgtgccgcccaaagaattcaaagactcaaccactttgtttcc
agagacgccatgaatatagagggcctttctgaagaaaccctaaagaagtttctagaaaaa
ggctttatagatcaataccccgatatttttcgcttaaatagatttgaaaaagaaattaag
agcttagaaggctttggggaaaaatcctatcaaaacttaataaactccattgaaaaatca
agggatgttgagttacccaattttatttatgccttaggcattgatcaggtgggattgcgt
aatgcaaaacttctctgtggtaagtttgaatatgatattgagggaataaaaagagctaca
gaagatgagctacaatcaatcgacggctttggtgcagtaatcgctcatagcattagccac
tattttaaagacgattcccacatttccttattagaggatgttttggaatatttacgaata
aaaatacccattataacggaagccaaggattcccttgtcaaaggtctaacttttgtagtg
actggggacgttaccaagttttccaaccgaaaggcccttacccaagctatcgaggcgcaa
ggggggaagataacaggaagtgtaacgaaaaaaaccgattacttgattaacaatgacgtt
gattcttcatcttccaaaaatggaaaggcaaaagagttaggcattcccattattagtgaa
gatgactttattctaaagtttaatattactcctgcagagtag

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