Amycolatopsis nalaikhensis: QP939_27840
Help
Entry
QP939_27840 CDS
T10497
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anw Amycolatopsis nalaikhensis
Pathway
anw03030
DNA replication
anw03410
Base excision repair
anw03420
Nucleotide excision repair
anw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QP939_27840 (ligA)
03410 Base excision repair
QP939_27840 (ligA)
03420 Nucleotide excision repair
QP939_27840 (ligA)
03430 Mismatch repair
QP939_27840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anw03032
]
QP939_27840 (ligA)
03400 DNA repair and recombination proteins [BR:
anw03400
]
QP939_27840 (ligA)
Enzymes [BR:
anw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QP939_27840 (ligA)
DNA replication proteins [BR:
anw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QP939_27840 (ligA)
DNA repair and recombination proteins [BR:
anw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QP939_27840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QP939_27840 (ligA)
MMR (mismatch excision repair)
DNA ligase
QP939_27840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QP939_27840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WIV52766
UniProt:
A0ABY8X9U9
LinkDB
All DBs
Position
complement(5652219..5654324)
Genome browser
AA seq
701 aa
AA seq
DB search
MTTALPPGAGDPVDPAKAKPFPSAARYEKALAEIRAAATAYYAGSDVLMDDDTYDALLAR
ALATEAAHPAWKPADTPTEAVGAGVAPGTEIPHSTPMLGLDNVFDTESLHKWAARLERVL
DHPVAAYTVEPKLDGLAVAARYSRGRLTLVLTRGTGTMGEDVTTRAILAKGLPAKLSSPR
TIEVRGEVFMTDEDFRTANELRTGHGEPAFAHPRSAAAGTLRAVDRAYSAPLSFVAYAVQ
GLADDGTHSEAMAQLEKLGVATTSGCKPALKVCHSAEEIEAAVAEIRDLRGSLGFGVDGA
VIKADRPEDRAAAGASTKAPRWGVAVKFPADTRSTKLLAIDVQVGRTGVITPVATLEPVF
IDGVKVVSATLHNFDDLERRNVRVGDTVFVRRAGDVIPEITGAKLDERPKNAKPFTPPEV
CPDCGSEIDRSQTRWRCTGGRACGARKILAHYATREAMDIEGLGGKIIDLLVAEGLVADP
ADLYDLDVPRLAALDGLGEISGGKLVAAIALTKKRPLSSLLTGLGIRMAGRAVSRRLARH
FGSMDALLAATPEQLQEVEGVGLERAETIAAELAELAGVIAKLAARGLTMTEPDAAPAPA
AATVLPLRKPDGSPMRVVVTGAVPGLKNRDEGNQAVERLGGTASGSVSAKTDLVVVGDGS
GSKADKAAELGVRILPAERFADLLAAHDGGDDSRAAEILAS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaccacggcacttccccccggcgccggggaccccgtcgacccggcgaaggcgaagccg
ttcccgtccgccgcgcgttacgagaaggcgctcgccgagatccgcgccgccgcgaccgcg
tactacgccggctcggacgtcctgatggacgacgacacctacgacgccctgctggcccgc
gcgctcgcgaccgaggccgcgcacccggcgtggaagcccgccgacaccccgaccgaagcc
gtcggcgcgggcgtcgcgccgggcaccgagatcccgcacagcacgccgatgctgggcctg
gacaacgtcttcgacaccgagtcactgcacaagtgggccgcgcgcctcgagcgcgtcctc
gaccacccggtcgcggcctacaccgtcgagcccaagctggacggcctcgcggtcgccgcc
cgctactcccgtgggcgcctcaccctcgtcctcacgcgtggcaccggcacgatgggcgag
gacgtcacgactcgcgcgatcctcgccaaaggcttgcccgccaagctttcctcgccccgg
acgatcgaggtccgcggcgaggtcttcatgaccgacgaggacttccgcaccgccaacgag
ctccgcaccgggcacggcgagcccgcgttcgcgcacccgcgcagcgcggcggccgggacg
ctgcgcgcggtcgaccgcgcctactccgcgccgctgtcgttcgtcgcctacgccgtgcag
ggcctcgccgacgacggcacgcactcggaagccatggcccagctggaaaagctcggcgtc
gcgacgacgtcgggctgcaagccagcgctgaaggtctgccacagcgccgaagagatcgaa
gccgcggtcgccgagatccgggacctgcgcggttccctcggcttcggcgtggacggcgcg
gtcatcaaggccgaccggcccgaggaccgcgccgccgccggcgcgtcgaccaaggcgccg
cgctggggcgtggccgtgaagttccccgccgacacgcgcagcaccaagctgctggccatc
gacgtccaggtcggccggaccggcgtgatcaccccggtcgccacgctcgaacccgtcttc
atcgacggcgtgaaggtcgtttccgccaccctgcacaacttcgacgacctcgagcggcgc
aacgtccgcgtcggcgacacggtgttcgtccgccgcgcgggtgacgtcatccccgagatc
accggcgcgaagctcgacgagcggccgaagaacgccaagccgttcacgccacccgaggtc
tgcccggactgcggttccgagatcgaccgctcgcagacgcgctggcgctgcaccggcggc
cgggcctgcggcgcgcggaagatcctggcccactacgccacgcgcgaggcgatggacatc
gagggcctcggcggcaagatcatcgacctgctggtcgccgaggggctcgtcgccgacccg
gccgacctgtacgacctcgacgtgccgcggctcgcggcgctcgacggcctcggcgagatc
tccggcggcaagctcgtcgcggcgatcgcgttgacgaagaagcgcccgttgtcgagcctg
ctcaccgggctcggcatccggatggccgggcgcgcggtgtcgcgacggctggcccggcac
ttcggctcgatggacgcgctgctcgcggccacgcccgagcagctgcaggaggtcgaaggc
gtcggcctggaacgcgccgagaccatcgcggccgagctcgccgagctggccggggtcatc
gcgaagctggcggcccgcgggctcaccatgaccgagccggacgccgccccggccccggcc
gcggccaccgtgctcccgctgcgcaagcccgacggctcgccgatgcgggtcgtggtcacc
ggtgctgtccccgggctgaagaaccgcgacgaaggcaaccaggccgtcgaacgcctcggc
gggacggcgtccgggtcggtgtcggcgaagacggacctggtcgtcgtcggcgacggttcc
ggcagcaaggcggacaaggcggccgagctgggcgtccggatcctgcccgcggagaggttc
gccgacctgctggccgcccacgacggcggcgacgacagccgcgcggcggagatcctcgcc
tcctga
DBGET
integrated database retrieval system
