Amycolatopsis nalaikhensis: QP939_44355
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Entry
QP939_44355 CDS
T10497
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anw Amycolatopsis nalaikhensis
Pathway
anw03030
DNA replication
anw03410
Base excision repair
anw03420
Nucleotide excision repair
anw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QP939_44355 (ligA)
03410 Base excision repair
QP939_44355 (ligA)
03420 Nucleotide excision repair
QP939_44355 (ligA)
03430 Mismatch repair
QP939_44355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anw03032
]
QP939_44355 (ligA)
03400 DNA repair and recombination proteins [BR:
anw03400
]
QP939_44355 (ligA)
Enzymes [BR:
anw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QP939_44355 (ligA)
DNA replication proteins [BR:
anw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QP939_44355 (ligA)
DNA repair and recombination proteins [BR:
anw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QP939_44355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QP939_44355 (ligA)
MMR (mismatch excision repair)
DNA ligase
QP939_44355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QP939_44355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
IclR_C
DNA_ligase_ZBD
HHH
RNA_ligase
DUF4164
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WIV55769
UniProt:
A0ABY8XJF7
LinkDB
All DBs
Position
9139982..9141973
Genome browser
AA seq
663 aa
AA seq
DB search
MDARERIQELADRIVALRDAYYRGSPLVADAEYDAVEDELRGLVEAHPELAPDPNPLEQV
GAPSVLHAPVRHSRPMLSLEKATKPEQVVAFFDRFPGQPVVVMPKLDGLSLALVYEDGRL
ARAVTRGDGTTGDDVTPLVRALTDGVPEKLGASGRVEVRGEAVMLRSTFAAYNTAHPDKP
LINPRNAAAGTLRAKDPATVAERRLRFFAFDLDTEPDNADADLGAALHSLGFTAAEMRRC
ADAAEAQARIGEIERQRDSLDYDLDGAVMRLADRDAYAAAGTRSSSPRGALAYKFAAEEK
TTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIRARGIKIGDTVLVRRA
GDVIPFVAGVLDESKRTGAEREIVPPSTCPSCAQPLTEQGNSRELFCTNVACPAQTVRRL
IHWASRAAADIDAIGGVWIERLAESGDLEHPSDFYRLTKERLLEFDRIGEVSATRMIESI
DASRGVGLRRALIGLAIPMASEGTAARLCRAGFGSLEDVADAGVEGLVAVDDIGPKVAAS
LIEHLTRLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVP
RPTFQRLCEKAGATIASSVSASTDLLITGADVGAAKLTKAEKHGVEVVDQGEIWQQLIAA
GVV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggacgctcgggaacgcattcaggaactcgccgatcggatcgtcgccctgcgcgacgcc
tactaccggggctcgcccctcgtcgccgacgctgagtacgacgccgtcgaggatgagctt
cgggggctcgtcgaggctcatcctgagctcgctcccgatcccaacccgctcgagcaggtc
ggtgcgccctccgtgctgcacgctcccgtgcggcactcccggccgatgctctcgctcgag
aaggcgaccaagcccgagcaggtcgtcgccttcttcgatcggtttcccgggcagcccgtc
gtcgtcatgccgaagctcgacgggctctcgctcgccctcgtctacgaagacgggcggctc
gcccgggccgtcacccggggggacggcaccaccggagatgacgtcactccgctcgttcgg
gcgctcaccgatggggtccctgaaaagctcggtgcttccgggcgggtcgaggttcggggt
gaggccgtcatgcttcgctccaccttcgccgcctacaacaccgcgcaccccgacaagccg
ctgatcaacccgcgcaacgccgccgccgggacgctgcgggccaaggatcccgccaccgtc
gccgagcggcggcttcggttcttcgccttcgatctcgacaccgaacccgacaacgccgat
gccgatctcggggccgccctgcacagtctcggcttcaccgccgccgagatgcggcggtgt
gccgatgccgccgaagcccaagctcggatcggggagatcgaacggcagcgcgactccctc
gactacgacctcgacggtgccgtcatgcggctcgccgaccgggacgcctacgccgccgcc
gggacccggtccagctctccccgtggcgccctcgcctacaagttcgccgccgaagagaag
accaccgtgctcgccgacgtcgtctgggatgtcgggaagaccgggaagatcgctcccgtc
gcctggctcgagcccgttttcgtcggcgggaccaccgtcacccgggccacgctcgccaac
caggaggtcatccgggcgcggggcatcaagatcggggacaccgtcctcgtccggcgggcc
ggcgacgtcatcccgttcgtggccggggtgctcgacgagtccaagcgcaccggggccgaa
cgcgagatcgtgccgcccagcacctgcccctcctgtgcgcagccgctcaccgagcagggc
aacagccgtgagctcttctgcaccaacgtcgcctgtcccgcccagaccgtgcggcggctg
atccactgggcctcgcgggccgccgcggacatcgatgccatcgggggcgtctggatcgaa
cggctcgccgagtccggcgatctcgagcacccctcggacttctaccggctcaccaaggag
cggctgctggagttcgaccgcatcggcgaagtctcggccacgcggatgatcgagtcgatc
gacgccagccgcggggtcgggctccggcgcgccctcatcggcctcgccatcccgatggcc
tcggaaggcaccgccgcccggttgtgccgggccggcttcgggtcgctggaagacgtcgcc
gacgccggggtcgaaggactcgtcgccgtcgacgacatcgggccgaaggtcgccgcctcg
ctcatcgaacacctcacccggctgcggcccgagctcgaacggctgcgggagcggggcgtc
tccctcgacgtgcgcgaagaggaccttccgccggtcgtcgcggccggagcgccgctggcg
ggcaagaccgtcgtcgtcaccggggcgatcagcgacccgcggtccggggagaaggtgccg
cgcccgactttccagcggctctgcgagaaagcgggcgcgacgatcgcctcgtcggtctcc
gcgagcaccgacctgctcatcaccggcgccgacgtcggtgccgccaagctcaccaaggcc
gagaagcacggcgtcgaggtcgtcgaccagggtgagatctggcagcagctgatcgcggcc
ggggtcgtctaa
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integrated database retrieval system
