Anaerococcus obesiensis: I6H46_08355
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Entry
I6H46_08355 CDS
T07194
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aob
Anaerococcus obesiensis
Pathway
aob03030
DNA replication
aob03410
Base excision repair
aob03420
Nucleotide excision repair
aob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6H46_08355 (ligA)
03410 Base excision repair
I6H46_08355 (ligA)
03420 Nucleotide excision repair
I6H46_08355 (ligA)
03430 Mismatch repair
I6H46_08355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aob03032
]
I6H46_08355 (ligA)
03400 DNA repair and recombination proteins [BR:
aob03400
]
I6H46_08355 (ligA)
Enzymes [BR:
aob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6H46_08355 (ligA)
DNA replication proteins [BR:
aob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6H46_08355 (ligA)
DNA repair and recombination proteins [BR:
aob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6H46_08355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6H46_08355 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6H46_08355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6H46_08355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DNA_pol_lambd_f
Zn_ribbon_PF0610
DUF7501
DUF6487
RNR_N
Motif
Other DBs
NCBI-ProteinID:
QQN55866
UniProt:
A0A7T7UTM2
LinkDB
All DBs
Position
complement(1651774..1653780)
Genome browser
AA seq
668 aa
AA seq
DB search
MDNIDKIKIDELIDKINELNYHYYTLDNPIVSDGEYDKLYDELLNLEKKTGYVNEFSPTQ
RVGGAILDKFEKHFHITRLYSQDKSQNITQLKDWLIRTKKLRDQYNKTHEDKLEELEFIT
EYKFDGLTINLTYENGLLKTAATRGNGIEGEDVTKQVLTIPTIPTKIKEKSLLEIQGEAV
MPLSSLKKYNEENEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQISTNSLDFNTEEE
KLNFLKEQKLPVYPYKKVINKFDDIVKEIDFIKEERHHIDVLTDGVVIKVNDVKTQEVLG
YTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPSAILEPVDFSGVTVQRATLNNY
DDILRKKLKIGSKVFIRRSNDVIPEILGVVDENQENTKEIEKPDKCPYCHSELIEGNVHI
YCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTIELFINKLGIKEIYDLYDITYEDLIN
LESFKEKKTNNLLNAIENSKSCELNHFIHAIGIPNVGIKTARDLAEKYKSFDKLRESKQE
DLIEIEDIGEKTAEDIVDFFNDPNIKKSLDILLSKGIKIKAIDTSEKSNSLDGMKIVITG
TIENYKRNDIKNLIIKNNGDVTSSVSKNTDLVLCGEKPGSKKEKAENLGVKILENQELFE
FLKKLEEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataatatagataaaataaaaatagatgagttaattgataaaataaatgaattaaat
tatcattactataccttagataatcccatagtttcagatggagaatatgataagttgtat
gatgagcttttaaatctagaaaaaaagacaggctatgtaaatgaattttctccaacccaa
agagttggtggagcaatattagataagttcgaaaagcactttcatattacaagattatat
tcccaagataaatcgcaaaatataactcaattaaaagattggcttataagaactaaaaaa
ttacgagaccaatataataaaactcatgaagataaattagaagaattagaatttattaca
gaatataaatttgacggtttaactattaatttaacttatgaaaatggtttattaaaaact
gcagctacaagaggaaatggtatagaaggagaagatgtaaccaaacaagttttaactatt
ccaaccattccaacaaaaataaaagaaaaatcattattagaaattcaaggggaagctgta
atgcccttgtctagtcttaaaaaatacaatgaagaaaatgaaatacctttaaaaaatgca
agaaatgctgcggcgggcgcaataagaaatcttgatacaagtcaaacaaaaaaaagaaat
ttaaaagcttatttttatcaaatttcaacaaatagtcttgattttaatactgaagaagaa
aaattaaattttttaaaagaacaaaaacttccagtttatccttataaaaaagtaataaat
aaatttgatgatatagtaaaagaaattgattttataaaagaagaaagacatcatattgat
gttttgacagatggtgttgtaattaaggttaatgatgtaaaaactcaagaagttttaggc
tatacaaataaatttccaagatggtctattgcttataaatatgatccagaggaatacaca
acaactttattagatgttgtgtggaatgtaggtcgatcaggaaaagttacaccgtcagca
atccttgaaccagttgacttttctggagtgactgttcaaagagccacccttaataattac
gatgatattttaagaaaaaaattaaaaattggttcaaaagtttttattagaagatcaaat
gatgtaattcctgaaattttgggagttgttgatgaaaatcaagaaaacacaaaagaaata
gaaaaaccggataaatgtccttattgtcacagtgaattaattgaaggaaatgttcatata
tattgtccaaattcaatttcatgtactcctcaattaaaagctagaatggtacattttgca
tcaagagatgcaatggatatagaaggtttgtctgaaaaaaccattgaattatttataaat
aaattaggcattaaggaaatctacgacctttatgatattacttatgaagatttgattaat
ttggaatcttttaaagaaaaaaagaccaataatttattaaatgccattgaaaatagcaaa
tcttgtgaattaaatcattttatccatgcaattggaattccaaatgtaggtataaaaact
gcaagagatttggcagaaaaatataaaagttttgataaacttagagaaagtaagcaagag
gacttaatcgagattgaagatataggggaaaaaacagcagaggacatagttgattttttc
aacgaccctaatatcaaaaaatcactggatattttattgtctaagggaattaaaataaaa
gctattgacactagcgaaaaatctaattcacttgatggaatgaaaattgttataactggt
acaatagaaaattacaaaagaaatgatattaaaaatttaattataaaaaataatggagat
gttacttcttcggtatcaaaaaatactgatttggttttgtgtggagaaaaacctggaagt
aaaaaagaaaaagcagaaaatttgggtgtaaaaattttagaaaatcaagaattatttgaa
tttttaaaaaaattagaggaggaataa
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