Amphiprion ocellaris (clown anemonefish): 111566556
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Entry
111566556 CDS
T06018
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111566556 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111566556 (lig4)
Enzymes [BR:
aoce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111566556 (lig4)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111566556 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
C8-3_MUC4
DUF5803
Motif
Other DBs
NCBI-GeneID:
111566556
NCBI-ProteinID:
XP_023122981
Ensembl:
ENSAOCG00000011768
LinkDB
All DBs
Position
24:complement(10530909..10538334)
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AA seq
908 aa
AA seq
DB search
MEGTSKSDTASQPSVAAQVPFIHLCTTLEKIQKAKLRPDKSKILRDFIESWRNFHSALHK
RNPKTTDSFYPSMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAMNNAGKKKDLVKKSLLHLI
TQSTALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFFIQTKLDGERIQLHKDGDVYKYFSRNA
YEYTQQFGGSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPAAETFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLINDRKLGKETLKKRYETLQTVFTPVKGRIHLVPKTEARTMQEVV
NALNDAIDSRDEGIMVKDPSSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDNDEPQKKKRKMPAKSKKVPGIIDHFKPQDLSGVNKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLISSN
QHDIVWAAWLLECLEQKEVVPWQPRHMIHMSPSTREHFAKEYDGFGDSFFVDTDEQQLRE
VFSRISSADASVNVGQVEERYSWSDLPTSMFRPFTAYMDSYADIGDPKSAIAASCLDIRA
LEFRYHGGTVVKKLEEGVSHVVITEETRLLDLRTLRRCFKKKFKIVRDTWVTESIEAGYL
MNDSDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagtgacactgccagtcagccgtctgtcgctgctcaggttcct
tttattcacttgtgcaccactttagagaaaatccagaaggctaaactccgtccagataaa
tccaagatccttcgagattttattgagtcatggcggaattttcattcagccctccacaaa
agaaaccccaaaactacagactccttctatccttccatgcgtctcatagttccctctttc
gaacgagagcgaatggcgtatggcatcaaagagagcatgctggctaaactctacatcgac
gtattaggtctcccaaagaatggcccagaggccaataaactactgaactaccgagctccg
accacatcccagggagaagctggagactttgctggcatggcgtactttgtgctaaagaaa
cgatgcaccagccaaggaaacctaagcatcaaggaggtcaacgacttcctggactcagtg
gctatgaacaacgctggcaagaagaaggatcttgtgaagaagagtctgctgcacctcatc
acccagagtacagctctagagcagaagtggctcattagaatgatcctgaaggacatgaag
ctcgggatcagtaaggaaactgtgctccaagtcttccaccccgacgctgctgagctctac
aacgtcaacaccgacctgaacaaggtgtgccagcagctccacaacccctccgtgtcctta
agtgaagtttctatcggacttttctctgctttcaagccgatgttggcagctgtagctaac
atccgcaatgtggaaaagcagatgggcaacagtccttttttcattcagaccaaactggat
ggggagagaattcagctgcacaaggacggagatgtgtacaagtacttcagccgaaatgct
tatgagtacacgcagcagtttggaggatctccactggagggatcgctgacaccttatatt
cacaacgtctttaaaagccatgtcgtcaactgtatcctggacggtgagatgatggcgtac
aacccggcagcggagaccttcatgcagaaagggagcaaattcgacatcaagaggctgatg
gacgactctgagttacagacatgcttctgtgtgttcgacgtgctgttgatcaatgaccgg
aaacttggaaaggaaacgctgaagaaacgctacgagacccttcagacagttttcacccca
gtcaaaggacggatccatctggtaccaaagaccgaagccagaaccatgcaggaggtggtg
aacgctcttaatgacgctattgacagcagagacgagggcatcatggtgaaggatccttca
tccatctacaagcctgacaaacgaggggaaggatggctgaaaataaagccagaatatgtg
gacggcttgatggatgagcttgacctgctgattgttggtggctactggggcaaagggaga
cgtggaggcatgatgtcccatttcttatgtgctgttgccgaagctccgaagcctggcgag
aaaccttcagttttccacaccctctgtcgcattggctccggctacaccatgaaagaactc
tacgaccttggtttgaagctcgccaagcactggaaggtgtaccggaaaaacgaccctcca
gcatccatcctgtgtggaacagagaaaccagaagtctacattgaaccctgcaactccgtc
atcatccaggttaaagctgcagagatagtcggaagtgacatgtacaaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgagacgacaaggagtggcaccagtgcatgact
ctggctgagctggatcagttccgcagcaaggcgtcggggaaactcgcctcgcggcacctt
cgcattgacaacgacgaaccacagaagaagaagcgcaagatgccggccaaatccaagaag
gttcccgggatcatcgaccacttcaaacctcaggacctctccggggtcaacaaggagacg
gatatgtttgaggatgtggagttttgcatcctgaacggcaccgaggatcaccctaaatct
gagctggaaaagggcgtggccaggtgcggaggtatcgtggttcagaacccgggccgggac
acctactgcgtgatcgctggtgtggagaacatgcgcgtgaagaacctgatttcatccaac
cagcatgacatagtttgggccgcctggctgctggagtgtctggaacagaaggaggtggtt
ccatggcaaccacgacacatgatccacatgtcgccctccaccagggagcacttcgccaaa
gagtacgatggcttcggcgacagcttcttcgtggacacggacgagcagcagctgcgggag
gtgttcagccggatcagcagcgcggacgcttcggtgaacgtcggacaggtggaggaacgt
tacagctggagcgatctccccaccagcatgttcagacccttcaccgcttacatggacagc
tacgccgacataggagacccaaaaagtgccatagctgcctcctgtctggacatcagggcg
ctggagtttcgctaccacggagggacggtggtgaagaagctggaggaaggagtttcacat
gtcgtcatcaccgaggaaaccagacttctggatttacggactctgaggcgctgcttcaag
aagaagtttaagatagttagagacacgtgggtgacggaatccatcgaagccggttatctg
atgaatgacagcgactacttggtttga
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