Amphiprion ocellaris (clown anemonefish): 111569341
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Entry
111569341 CDS
T06018
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aoce03036
]
111569341 (smchd1)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111569341 (smchd1)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111569341 (smchd1)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
111569341 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
HATPase_c_3
SMC_hinge
HATPase_c
CBM39
Motif
Other DBs
NCBI-GeneID:
111569341
NCBI-ProteinID:
XP_023127166
Ensembl:
ENSAOCG00000013318
LinkDB
All DBs
Position
22:18979622..19008227
Genome browser
AA seq
1970 aa
AA seq
DB search
MLSSSRAVGAPPRGRTSRRIRVCDLRLDKQERTEKHLETVGLDFNDFLQDLEREFRISPH
EAFVVATTDRTTLDFDKFKELQDGSTLYLLQNEHQALPVAAEEHITFTPHYDTLIRGGMY
EYYASQGQAPLSYTLAELIDNALSATAKNKGRRIIEIRVLNDKTVGKPAVIVLDNGCGMT
SKQLNNWAVYRLSKFTKESSTFASDKEGYVRPDHVPRSLNSDISYFGVGGKQAVFYIGDS
ARMISKPVGSPDVHELVLSKEEFERKEKNKEDIFSGVILNRKPGDSSHIKNNDEHFLQAL
IAEERGKESFTAVVITGVQPEHITFLTERFNVVTRELAHIYHYYIHGVNGNVRNKSSSDS
DDLKIDIHVTLREKPPKCPRAIHLREVEDDMQTLYINAAADTFEFRASTAADNGTVEGII
RYHPFLYDKETYPKRPEAPDNDDDDNESGFTDQARKRMPIFECFWNGRLIPYTAVSEFDW
CSPSKGAKELAECYSRLSGVLFTDDRFQVTTNKLTFTDLEMKLKNKDTIYTTVVNGQKSS
KRANIQNEFSLWLQNCHEKFDKQVKFLGYQGTITRPEVPSKKMQHPWAMFSSIEWDGKTY
KTGQRVKSLRTNPVLYGTIVKFLLYGSYDGDVFATGGQVEVIREPKALYDMTKIIPISKI
DKTATDEAIKKNIDNDFAKLPEWLKVVWPKGNEWPQNAVCPAGTPLGPINVEILNKRGES
ISSMPSAGQGKGPVLSMQLTIVLHDSKGDKVVSKFIAQHSPKWGFEFKKNESLTQLGKYT
LFLNTVMKDTNEPVFGGKKLPNFTLKFTVKEGDAQSFVITAVSPSVRVGVPFNIPLQFKD
LYGNLTAPPKPPPVLECNGLDVNYGAVDSRGTTFTVKNVTVKGKILHYQQNESYDLKVTL
SGLKTETQTVKIILHPGTPHSLHVMPEEDPVKVENGNPVAFNVEIHDECGNITAHPRQIV
RCQVEELPLVTVDCSNTGAGQLMTKPINLKIIDGQPQTRKVQFEMPSQRHIASITRELKV
IPSTRVALMQVYSAGDDNLVLRNNDKIDWVAGGVLENLFYRLYDEAGSEVTISAEIASKI
KVNWTGDIDLEDLIHRRLPDIEVPTQVQDERFFQVSYHDQSVSVSFTITPRPDEPTRLKI
TLPQSTVRLGEILPGNINLEPVDQYDNVTKTLNPTCVRDMSVEAEGLDKSSVAFMWQQWS
SSVVVTGIRFSSGPLGLREMCFKYSTYVEHIKIEVTAGIPAQLKLISGPEQPLQLFSDHG
ISEPFLVQLYDEWENPSPDKRVVVQLRSPSTLKVTATVMSQPVNAQGKASFTVTSVSGPK
GCYKLQFTGFFNKKPIPGPSVNLTIIPDRNKPVRLSVEYDSKVRFLAGGIFPVFSVTVVS
EEESPITTFSPTAVSMRLWSGVSSGGTPPPTVPELKCSKPMGHEKNDRFYFRDKQIPEHA
GPHVIQFSLRVDETKLLFSDQIPVNVVANQPVKLGPDSQPRTPVVSNSKDITSRTLVENM
TLRIMDSHGNPAGQDLNGRVAVSIKCTNGDKNKSLPLFEGKIHSFRLDLVDGKAYITRLA
IIENSPGENGSIYTLLFQPEVPKFPTPLNPFELEFHFYNDADNQAKISHLTKQKDELTVA
IAAYENIFLTSTQLLKLLTDQCLAASNKESSLRNELSKRNVTITQPVSSQAIDTLINKKR
AEVDKILKMPRRSCSIRENFMLQPDVLGMVGHLAFVEDDTAAWVISWHIRGDMDCIITKT
KEAAERIYRETQGKQQVMALDSVFVPPRDRPLPHIRYGRTLFDPPGNPVYARELLICPND
QECCDIVFKNILGDTIVIDDLQSANNYRRAVVQNKSPCPTILTRQGDRVSGKGKFGGAQN
KAPPMQTLPLFGAPFPPIYHTLRNDIELLQQYQLAVKKREEAEKERSDHIQNLKSPEMER
KNQEMEEKKKLLEDIERQLASTPVTPVKRGAEDAGEPSGLMTKRARRSLT
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgctgagctcgtcccgggctgttggcgcccctccgcggggaagaacaagcaggaggatc
cgggtctgcgacctccgcctcgacaagcaggagaggaccgagaaacatctggaaacagtt
ggtttggacttcaacgactttcttcaagatttggaaagggaatttcgaatcagtccacat
gaggcatttgtggtggcaacaactgacagaacaaccctggattttgacaaatttaaggag
cttcaggatggcagtactctctacttgttgcaaaatgagcaccaggctctgccagttgca
gcggaggagcacatcacgtttacacctcattatgatacgctgatccggggtggcatgtat
gaatactatgctagtcagggccaggcaccattatcatacacacttgctgagctgattgac
aacgctctttcagccacagctaaaaacaaaggacggaggattatagagatacgggtgctg
aatgacaaaactgttgggaaacctgcagtcattgtgcttgataatggttgtgggatgacc
tcgaaacagctgaacaactgggctgtgtacagactctctaaatttacaaaggagagcagc
acatttgcaagtgataaagagggctatgttcggccagatcatgtacctcgcagtctcaac
agtgatatatcctactttggagttggaggaaaacaggccgttttctacattggagactca
gccaggatgatcagcaagcctgtaggttctccagatgttcatgagctggtcctttcaaag
gaagaatttgagagaaaagagaagaacaaagaagatattttcagcggggtcatcttaaac
aggaagcccggtgattcttcacatataaagaataatgacgagcacttcctccaggccctt
atcgctgaggaacgtgggaaggaaagctttacagctgtcgtcattacaggagtccagcct
gagcatatcaccttcctgacagagagatttaatgtggtgaccagagagctagcgcacata
tatcactattacattcacggagtcaatggaaatgtcaggaataagagctcgtcagactca
gatgatcttaaaatcgacattcatgtcactttgcgggagaaacctcccaaatgtccccgt
gcaattcacctcagggaagttgaagacgacatgcagactctgtacattaatgcagctgca
gacacgtttgagtttagagcctccactgcagccgacaacggcacagttgagggaatcatt
cggtatcatcccttcctctatgacaaggagacctaccctaaacgtccagaagcccctgat
aatgatgatgacgataatgagtctggattcaccgatcaggcaagaaagaggatgccgatc
tttgaatgtttctggaatggacgactcataccttacactgcagtctctgagtttgattgg
tgttctcccagtaaaggagcaaaagagcttgcagagtgttacagtcggttgtcaggggtg
cttttcactgatgacaggttccaggtcaccacaaacaaactcacctttactgacctggag
atgaaactgaagaacaaggacactatctacacaactgttgttaatggacagaaatcctca
aaaagagctaacattcagaatgagttcagtctttggcttcaaaactgtcatgagaagttt
gacaagcaagtgaagtttcttggctaccaggggaccataacacgaccagaagtgccttct
aagaaaatgcagcatccctgggccatgttctcctccatcgaatgggatggcaaaacatac
aaaacaggccagcgtgtgaagtctctgagaacgaaccctgttctctacggtactattgtt
aagtttttgctgtatggaagttatgatggagacgtctttgccacaggaggacaggtggaa
gtgattcgggagcccaaagctctttatgacatgaccaagatcatccccatttccaagatt
gacaaaactgccactgatgaagccatcaagaaaaacatcgacaatgactttgccaagctt
ccagagtggctgaaagtggtctggccaaaaggtaacgagtggccacagaatgctgtttgt
cctgctgggacccctttagggccaatcaacgttgaaattctaaacaagagaggcgagtca
atatcctcgatgccgtcagcgggtcaggggaaaggaccagtgctgagtatgcagctcaca
atagtcctgcatgattctaaaggagacaaagtggtttcaaaattcattgcccaacattca
ccaaaatggggtttcgagttcaaaaaaaatgagagtctgacccagctggggaagtacaca
ctgtttctaaacacagtaatgaaagacaccaatgagcccgtctttggaggcaaaaagctt
ccaaacttcactctcaaattcaccgtcaaagagggtgatgcacagagcttcgttatcacc
gcagtgagccccagtgttcgtgtaggggtgcccttcaatattcctctacagtttaaagat
ttatatggtaacttaacagcacctcccaaacccccgcctgtactggagtgcaatggcctg
gatgtgaattacggggcagtggacagccgtgggaccacgttcaccgtgaaaaatgtcaca
gtgaaaggaaaaatcttgcattaccagcaaaatgagagttatgacctgaaagtgaccctg
tctggcctgaaaacagaaacacagactgtcaagatcattcttcatcctggtaccccacat
tccctccacgtgatgccagaagaagacccagtcaaagtagagaatggaaacccagtcgcc
tttaatgttgaaattcatgatgagtgtggaaacatcactgctcaccccagacagatagtt
cgctgccaggttgaggaacttccactggtgacagttgactgcagcaacacaggagctggc
cagcttatgacaaagcccataaacctgaaaataattgatggacagccacaaacacgcaaa
gttcagtttgagatgcctagtcaacggcacatagcgtcaatcacaagagagctgaaggtg
attcccagcacacgagtcgctctgatgcaggtctacagcgcaggtgatgacaatctggtg
ctgaggaacaatgacaagatagattgggtagcaggaggagtgctggagaacctgttctac
agactgtatgatgaggctggcagtgaggtaacaatcagtgctgaaatagcctccaagatc
aaggtgaactggactggagatattgatctggaagatttgatccaccgaaggctgcctgat
atagaagtgcccacacaggtgcaggatgagcgctttttccaggtgtcctaccatgaccag
agtgtctctgtctccttcactataactcctcgtccagacgaaccaacacggctaaaaata
acgcttccccaaagcacagtgaggcttggtgaaatcctacctggaaacatcaacttggag
cctgtggaccagtatgacaacgtcaccaagacacttaaccccacctgtgtgagggacatg
agtgtggaagctgaaggtctggataaatcttctgtcgcctttatgtggcagcagtggagc
agttcagttgtggtgacgggaatacgtttcagttcaggacctcttggcctcagagagatg
tgcttcaaatactccacgtatgtggagcatatcaagattgaagtgactgctggtattcct
gcacagcttaagctcatcagtggacctgagcagcctttgcagttgttcagtgaccacggt
atctccgaacctttcctcgtccagctgtacgatgagtgggagaacccttctccagacaag
agggttgtggttcagttaagatcaccctcaacactgaaggtgacagcaactgttatgtca
caacctgtgaacgctcaagggaaagcctctttcactgttacaagtgtgagtggtccaaag
gggtgctataagcttcagtttacaggtttcttcaacaagaagcccatccctggtccatca
gtgaacctcactatcatccctgatcgcaacaaacctgtcagactgtcagttgagtacgac
agtaaagtcaggtttcttgctggaggcattttcccagttttctcagtaaccgtggtgtct
gaggaagaaagtccaattacaacttttagcccgacagctgtgtccatgcgtctgtggagt
ggagtgtcatcaggaggaacaccaccaccaacagtccctgagctgaagtgtagtaaaccg
atgggacatgagaagaatgaccgcttttactttagagataaacagattccagaacatgct
ggaccacacgtcatacagttttctctgcgtgttgatgaaactaaactcctgttcagtgat
cagattcctgtaaatgtggtggccaatcaacctgtcaaactgggacccgactctcagccc
cgtaccccagttgtttccaacagtaaagacatcaccagccgaaccttggttgagaatatg
actctgaggataatggattcacatggaaacccagcagggcaggacctcaacgggagggtc
gcggtctctataaagtgcaccaatggagataaaaacaaaagcctccctttgtttgaagga
aaaatccacagtttccggcttgacttggtagacggaaaggcttacatcactagactggct
atcatagagaatagtcctggtgagaatggcagcatatacaccctgctcttccaacctgaa
gtgccgaagtttcccacaccattgaatccttttgagctcgaattccatttttacaatgat
gcagacaaccaagccaaaatctctcacctgaccaagcagaaagatgagctcaccgttgct
attgctgcatatgaaaacatctttctgacatctacacaactccttaaattactgacagat
caatgcctggctgcaagtaataaagagagcagccttagaaatgagctgagcaaaaggaat
gtgacaataacacaacctgtatctagccaagctattgacacactcataaataagaagcgt
gcagaagttgacaaaattctgaaaatgcccagaagatcgtgctctatacgtgagaacttt
atgctgcagccggatgttttgggaatggttggccacctggcctttgtggaggacgatact
gctgcgtgggttatttcctggcacatcaggggtgacatggactgtatcataaccaaaaca
aaagaagcagcagagaggatctatagagaaacgcagggcaagcagcaggtcatggccctg
gacagcgtgtttgtgccgccaagagacaggccgctgccacatatcagatatggccgcacg
ctctttgatccgcctgggaacccggtctatgccagagagctgctgatttgccccaacgac
caggagtgctgtgacatcgtgtttaaaaacatcctgggagatactattgtgattgatgac
ctgcaatctgcaaacaactacaggagggcggtggtgcagaacaagtcaccgtgtcccacc
atcctgaccaggcagggggacagagtcagtggcaagggcaagtttggaggtgcacagaac
aaagccccaccgatgcagacattgccactgtttggagcccccttccctccgatctaccac
actcttagaaatgacatagagctgctccaacagtaccagttagctgtgaaaaagagggag
gaggcagaaaaggagcgaagtgatcacatacaaaaccttaagtctcctgaaatggaaaga
aagaaccaagaaatggaagagaagaagaagctgctggaggacattgaaagacaacttgct
tcaacaccagtaacaccagtgaaacggggtgctgaggatgctggtgagccatctggcctc
atgacaaaaagagcaagacggagtctcacataa
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integrated database retrieval system
