Amphiprion ocellaris (clown anemonefish): 111579967
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Entry
111579967 CDS
T06018
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018
RNA degradation
aoce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111579967 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
111579967 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111579967 (lsm3)
03041 Spliceosome [BR:
aoce03041
]
111579967 (lsm3)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111579967 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
111579967 (lsm3)
Spliceosome [BR:
aoce03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111579967 (lsm3)
Complex C
U2 snRNP components
111579967 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
111579967
NCBI-ProteinID:
XP_023143281
Ensembl:
ENSAOCG00000007658
LinkDB
All DBs
Position
5:9639755..9645957
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagtagagcagcaaccaactaccaacacagttgaggagcccctcgatctg
atcagactcagtcttgatgagcggatctacgtcaagatgaggaacgaccgggagcttcgc
ggccgactgcatgcctacgatcagcacctgaacatgatcctgggtgacgtggaagagacg
gtgacgacggtggagatcgatgaggagacttatgaagaactctacaagtcgaccaagagg
aacatccccatgctgtttgtcagaggagacggcgtcgtcctcgttgctccacctctcagg
gtgggttaa
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