Amphiprion ocellaris (clown anemonefish): 111588169
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Entry
111588169 CDS
T06018
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04115
p53 signaling pathway
aoce04145
Phagosome
aoce04148
Efferocytosis
aoce04350
TGF-beta signaling pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
111588169
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111588169
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111588169
04148 Efferocytosis
111588169
09143 Cell growth and death
04115 p53 signaling pathway
111588169
09144 Cellular community - eukaryotes
04510 Focal adhesion
111588169
09142 Cell motility
04820 Cytoskeleton in muscle cells
111588169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aoce04131
]
111588169
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111588169
Membrane trafficking [BR:
aoce04131
]
Endocytosis
Phagocytosis
Opsonins
111588169
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111588169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
EGF_CA
cEGF
EGF
Laminin_G_3
TSP1_ADAMTS
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
111588169
NCBI-ProteinID:
XP_023154143
Ensembl:
ENSAOCG00000010090
LinkDB
All DBs
Position
20:complement(17176024..17183357)
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AA seq
1172 aa
AA seq
DB search
MMLCGIFLLLMLWSCEGARLAESRDDNSVYDLFDLARVNKRHNGVSLVKGADPNSPAYKV
LNADLIPHVPDSSFRDLLDSIQAERGFLLLVNLKQFKKNRGSLLTIEKDDGSGPVFEVIS
NGKANTLDVVYSTESQQQVVSIEDANLATGHWKNITLFVQDDRAQLYVGCEEINVSEMDV
PIQTVLAREVADIAKLRIGKGAVKEKFMGVLQNVRFVFGTTLDAILRNKGCHSGAALTDV
MTLDNPVNGSSPAIRTDYTGHKAKDLQSVCGFSCEDIASMFRELKGLNVVVKQLSNELQK
VSQESISLKNYMNIHSGVCIHNGIVHQDKEEWTVDGCTECTCQNSATVCRKISCPVVSCA
NATVPDGECCPRCGNQRDPEEDAWSAWSEWTQCSVTCGRGIQQRGRSCDRINSKCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITQIRLCNSPTPQMGGRDCQGVG
RQTKVCRKSPCPINGGWGPWSPWDTCSATCNGGIQNRKRLCSDPAPKYGGKDCVGDATMS
QICNKQECPIDGCLSNPCFSGTKCTSFPDGSYKCGRCPLGYTGNGITCKDIDECKEVPDA
CHTHNGVHRCENTEPGYNCLPCPARFSGPQPFGRGVEEATAKKQVCAPRNPCQDGSHNCH
KNANCIYLGVFSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCI
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQIDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQVDSDGDGRGDVCKDDFDQDNVLDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
FDKTYAGGRLGLYVFSQEMVYFSDLKYECRDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgcggcatctttttgctgttgatgctttggagttgtgagggcgcacggttg
gcagagagcagagatgataacagtgtgtatgacttgttcgatctggcccgggtaaacaag
aggcacaacggagtgagtttggtcaaaggcgcagatcccaacagccccgcgtacaaggtc
ctgaacgcagacctgatcccccacgtccccgacagctccttcagggacctgctcgactcc
atccaggccgagcggggcttcctcctcctggtgaacctgaagcagttcaagaagaacagg
ggcagcctgttgaccatcgagaaggatgacggatccggacccgttttcgaggtcatttcc
aacggcaaggcgaacaccctggatgtggtgtactccaccgagagccagcagcaggtcgtg
tccatcgaggatgcaaatttggcaactggacactggaagaacatcacgctgttcgttcag
gatgaccgtgcgcaactttacgtgggctgcgaggagatcaacgtgtcagagatggatgtg
cccatccagacggtgctggccagggaggtggcagacattgccaagctcaggattggaaag
ggagctgtgaaggaaaaatttatgggagtgcttcagaatgtgcgctttgtctttggtacc
actctggatgccatactgagaaataagggatgccacagtggagctgccttaacggatgtc
atgaccctggacaacccagtcaatggctccagccctgccattaggactgattacactggc
cacaaagccaaagatctgcagtctgtctgcggcttctcctgtgaggacatagccagcatg
ttcagggagctcaaaggactcaatgtggtggttaagcagctgtcaaacgagctccagaaa
gtgtctcaggaaagtatatccctaaaaaattacatgaacatccacagtggagtttgcatc
cacaatggcatcgtgcaccaagacaaagaggaatggaccgtggacggctgcacggagtgc
acctgccagaactccgctactgtgtgtcgcaaaatctcctgccctgtggtatcatgtgct
aacgccactgtgcccgatggagagtgctgccctcgctgtggaaatcaacgcgatccagaa
gaggacgcttggtccgcatggtctgaatggacccagtgttcggtgacttgtggccgtggc
atccagcagcgtggacgctcctgcgaccgcatcaacagcaagtgtgagggcacctctgtc
cagacccgtgattgctacccacaggaatgtgacaaacgcttcaaacaggatggaggctgg
agccactggtcaccctggtcttcatgctctgtgacctgtggtgagggggtcatcacccaa
atccgcctctgcaactcccccacaccccagatgggtggtagagactgccagggagtggga
cgtcaaactaaagtctgccggaagtcaccctgtcctatcaatggaggttggggaccttgg
tcaccatgggacacctgcagtgctacctgcaatggaggaatccagaaccgtaaacgtctc
tgctctgaccctgctcctaaatatggtggaaaagactgtgttggtgatgctactatgtct
caaatttgcaacaaacaggagtgccccattgatggctgtctctccaacccatgtttctct
ggaacaaagtgcaccagcttccccgatggctcttacaagtgtggcagatgtccacttggc
tacactggaaatggcatcacctgcaaagacatcgatgaatgtaaagaggtccctgatgct
tgccatactcataacggagtccatcgctgtgagaacactgagccaggttacaactgcctg
ccctgccctgcacgtttctctggtcctcagccctttggaagaggagtggaagaggcaaca
gctaaaaaacaggtttgcgctccccgtaatccttgccaagacggtagccacaactgtcat
aaaaatgcaaactgcatctacttgggcgtcttctccgagtccatgttccggtgcgagtgc
aagccagggtatgccgggaatggccgtatttgcggagaggacagtgacttggatggatgg
cccaacactgacctgctgtgtgtggagaacgccacctatcactgcaagaaggataactgc
cccaaccttcccaattctggccaggaagatcatgacaaagatggtctgggtgatgaatgt
gaccatgatgatgacaatgatgggatccccgatgacagggacaactgcccaagagtgtac
aaccctgcccagtatgacgcagacagagacgatgttggggatcgttgtgacaactgcata
tttgaagccaacactgatcaaaccgacactgacaacaatggagagggtgatgcctgtgct
gttgacattgatggggatggcattctgaatgagaacgacaactgcccctatgtttacaac
gtggaccagagagacactgacagggatggggtgggagatcattgtgataactgccctctg
gagcacaaccctgatcagatcgactctgactcagatcgcattggagacaagtgcgacaac
aaccaggacattgacgaggatggtcaccagaacaacttggacaactgcccctacatccct
aatgccaaccaggctgatcatgacaaggacggcaagggtgacgcctgtgaccacgatgac
gacaatgatggcattcctgatgacaaagacaactgcagactggcctttaaccctgatcaa
gtggactctgatggtgatggccgtggtgatgtgtgcaaggacgattttgaccaagacaat
gttttggacatctatgatgtttgcccggagaactttgctatcagtgaaaccgacttccgc
agattccagatggttcctctggaccccaagggcacctctcagattgaccccaactgggtg
gttcggcatcagggcaaagagttggtgcagactgtcaactgtgaccctggcattgctgtc
ggttatgatgagttcagtgcagtggatttcagtggaacgttcttcatcaacactgacaga
gatgacgactacgctgggttcgtgtttggctaccagtccagctctcgcttttacacagtc
atgtggaaacagatcacacagacgtactggtcccacacacccacaagagctcagggctac
tctggcttgtcaatcaaagtggtcaactccaccactgggcctggcgaacatctgaggaac
gctctgtggcacactggagacaccccaggacaggtccgcactctgtggcacgaccccaag
aacattggctggaaggacttcacagcctacagatggcatctgacccatagacccaagact
ggacttattagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaacatc
tttgacaagacatatgctggtgggcgactaggcttgtacgtcttttctcaggagatggtt
tacttctcagacctcaaatatgaatgcagagattcataa
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