Asparagus officinalis (garden asparagus): 109832974
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Entry
109832974 CDS
T05243
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
109832974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109832974
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109832974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF2703
Motif
Other DBs
NCBI-GeneID:
109832974
NCBI-ProteinID:
XP_020256083
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All DBs
Position
3:10977125..10992092
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AA seq
955 aa
AA seq
DB search
MGVPAFYRWLSDRYPLSISDVVEEEPFDADRGVAVPIDLTKPNPNGVEFDNLYLDMNGII
HPCFHPEGRPSPTTYDEVFKSIFDYIDHLVGLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAVEAAAEEERLREEFEAEGRTLALKEKSETSDSNVITPGTQFMTSLSVALQYYIH
LRLSRTVGWQSMKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEIHFSILREVITMPGQQEKCFSCGQIGHLAAECRGPEVNDKAVVDIPIHKKKYQF
LNIWVLREYLENDLAIPDPPFEINFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MFIYRREFATMGGYLTDAGEVSLERVEHFIQSFAVYEEQIFQKRARIQQAYENNGEMKLK
LQRETSEDVPPMPVDKVKLGEPGYKERYYVEKFELEESESIDDIKKDVVQRYVEGLCWIM
RYYYQGVCSWLWFYPYHYAPFASDLKGLADMEITFFPGQPFKPFDQLMGTLPAASSDALP
KLYGSLMTDPNSPLREFYPKDFKIDMNGKRFAWQGIAKLPFIDERLLLSETKKLEDTLTE
EEKSRNRTMFDILYVYERHTLAAQVASLYHLYSQSQLQGQPYCIAINPAYSDGMNGFLCL
SERNSYNISIPSPIGGWSTIENNRALNATYLNPKHHQHIPEPPEGVVMPVKTVKPQDMKP
FPVLWHEDNRRNQARERPQVAGAITGPLLGAAAHRLVKNSLQANFSGNSRFLDTPNRNYP
QMVARPRPAGPLGYERGFQDANPYHNYSGPNPRAHSNSRPVNFSNETHRQNYRTEERTNS
SQDQYYNLRTGMSTLAVQEGTSSQSHSRAQNAGFGTNQQQQSSGLFWDHHQPQQVHSPGP
PPSLPPTNWIDRQPKYGYSKQEVSSKAVYDNKQQQQVYRIKPRAPENQSDFRRQY
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggccttctaccgatggctctccgatcgataccctctctcgatctccgac
gtagtcgaggaggagcccttcgatgccgatcgaggcgtcgctgttcccatcgatctcacg
aaaccaaaccctaatggcgtcgaattcgataatttgtatctcgacatgaacggaatcatt
catccttgctttcatcccgaaggaaggccttcacctacgacttatgatgaagttttcaaa
tccatctttgactatatagatcatctagttgggcttgttcgccccagaaagctgttgtac
ctggcaattgatggcgtagctcccagggctaaaatgaaccagcaaagatctaggcgtttc
agagctgcaaaagatgctgttgaagcagctgccgaagaggaaagactgagagaggagttt
gaggctgaaggaagaactctagctcttaaagaaaaatctgaaacatcagactctaatgtt
ataactcctgggactcaatttatgacttcactctctgtcgcacttcaatattacatacat
ttgagactgagccggactgtgggatggcagtctatgaaggttatcttgtctgattcaaat
gttcctggtgaaggcgaacacaaaataatgtcatacatacggctacaacgcaatcttcct
ggttttaatccaaacacacggcattgtctatacggactggatgcagatctaataatgctt
tctcttgctactcatgagattcacttctcaattttgagagaggtgatcacaatgccaggg
caacaggagaaatgcttttcctgtggtcaaattggacatcttgcagctgagtgtagaggt
cctgaggtgaatgacaaggctgtggttgacatacccattcacaaaaagaaatatcagttt
ctgaatatctgggttttgcgagagtatttggagaatgatttggcaataccagatcctcca
tttgaaataaactttgaacggattgtggatgattttgttttcatgtgcttctttgtggga
aatgactttctaccacacatgcccactttggagattcgtgagggtgcaatcaatctgctt
atgtttatctatagaagggagtttgcaacaatgggcggttacctgacagatgctggtgag
gtgtcactggagagggttgagcattttattcagtcatttgcagtttatgaagaacaaatt
tttcagaagcgtgctcgtattcaacaggcttatgagaataatggtgaaatgaagctaaaa
ttgcagagggaaacttccgaggatgttccacctatgcccgtagacaaggtaaaattaggc
gagcctggttacaaggaaaggtactatgttgagaaatttgaattggaagaatcagaatca
attgatgacatcaagaaagatgtagtacaaagatatgtggaaggtctttgttggatcatg
cgatattactaccaaggtgtttgttcttggctatggttttacccatatcattatgcccct
tttgcgtctgatctcaaaggtctggcagacatggagattacttttttcccggggcagcca
tttaaaccgtttgatcagctgatgggtacactaccagctgcaagctctgatgcgctgcct
aagctgtatggatcgctgatgactgatccgaattcacccttaagagaattttaccctaaa
gattttaagatcgacatgaatggcaaacgctttgcatggcagggtattgcaaagcttcct
ttcattgatgaacgacttctgctttctgaaacaaagaagcttgaggacacattgacagaa
gaagagaagtctcgtaatagaacaatgttcgacatactttatgtttatgaaagacatact
ctagcagcacaagttgcatcactgtatcatctttactctcagtcacaactgcaaggacag
ccgtattgtattgcgatcaatccagcgtatagtgatggaatgaatgggttcctatgttta
tctgaaaggaacagttacaatatatcaataccttctccaattggagggtggagcaccatt
gaaaataaccgagctctaaatgctacctatctcaaccctaagcatcatcaacacatcccc
gaaccgcctgaaggtgtggtaatgccagtgaagactgttaagccccaagatatgaagcct
ttccctgtattgtggcatgaagataatcgtcgtaatcaagctagagaaaggcctcaggtt
gctggagctataactggtcccctgctaggagcggcagcacatcgtttggtaaaaaactct
ctacaggccaacttcagcggcaattcacgatttttagacacaccgaataggaattatccg
caaatggttgccaggcctaggccagctggtcctctaggatatgagagaggttttcaggat
gctaatccttatcataactattctggtcctaacccccgagctcattcaaattcaaggcca
gttaatttctccaatgagacacacaggcaaaactatagaacagaggagagaacaaactct
tcgcaagatcaatactacaaccttagaactgggatgtcaacattagcagttcaagaggga
acaagctctcagtcacattcaagggctcaaaatgctggttttgggacaaatcagcaacag
caatcttctggtcttttctgggatcatcatcagccgcagcaagtccacagtcctggtcca
ccaccttcattgccgcccacaaattggattgataggcaacctaagtatggttatagcaag
caagaagtctcatccaaggcagtatatgataataaacagcagcagcaagtatacaggatc
aaaccacgtgcgccggaaaatcaatcagactttagaaggcagtattga
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