Asparagus officinalis (garden asparagus): 109842802
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Entry
109842802 CDS
T05243
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109842802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109842802
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109842802
Complex C
U5 SnRNP specific factors
109842802
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
Roc
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
109842802
NCBI-ProteinID:
XP_020267278
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Position
5:complement(39664365..39672464)
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AA seq
889 aa
AA seq
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MPIIKPVRTVRFEVTPARDSSSTYVSTEFLLGLASNPALVRHVALVGHLQHGKTVFMDML
VEQTHKISTFDTERERHVRFTDTRIDEQERRISIKSVPMSLVLEDSNGKSYLCNVMDTPG
HVNFSDEMTAALRLADGAVLVVDAADGVMVNTERAIRHAIQERLPIVVVINKVDRLITEL
KLPPQDAYFKLRHTLEVINDLITSASSSAGGSQTVDPAAGNVCFASGSAGWSFTLQSFAK
LYVKLHGIPFDANKFASRLWGDLYYHPDTRTFRKKPPMGGGERSFVQFILEPLYKIYSQV
IGEHKKSVETTLSELGVTLSNAAYKLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKEA
AAKKIEHIYTGPQDSYIAEAMKDCDPTGPLMVNITKLYPKSDCSVFDAFGRVYSGTIQTG
QTLQVLGEGYSPDDEEDRTVKEVTKLWVFQARYRIPISKAPAGSWVLIEGVDASIMKTAT
LCPLDMEEDVYIFRPLRFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEES
GEHTILGTGEIYLDSIMKDLRELYSEVEVKVADPVVTFCETVVESSSMKCFAETPNKKNK
ITMIAEPLERGLADDIENGVVSIDWDQKTIGDFMINRYSWDILSARSIWAFGPDKQGPNI
LLDDTLPSEVDKNLLGAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIMDAAIAAEPLHRG
GGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKP
GTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCMSLFDHWAIVPGDPLDKSIVLRPLEPA
PIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAAELHLQMT
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcatcaagcccgtccgcacggtccggttcgaggtcaccccggccagggactcc
tcctccacctacgtctccaccgagttcctcctcggcctagcttcgaacccagccctcgtc
cgccacgtggcgctcgtcggccaccttcagcacggcaagaccgtgttcatggacatgctc
gtcgagcagacccacaagatctcgacgtttgataccgagagggagaggcatgtgaggttc
accgacacgaggattgatgagcaggagaggaggatctcgattaagagtgtgcccatgagc
ttggtgctcgaggactctaatgggaagagctatttgtgcaacgtgatggatactcccggg
catgtgaatttctccgatgagatgactgctgcgttgaggttggcggatggggccgtgctt
gttgttgatgccgctgacggggttatggtaaatactgagagggccatacgtcatgcaata
caagagaggcttcccattgtcgttgtaataaataaggtggacaggctgataacggaactg
aagctgccaccacaagatgcttattttaagttgagacataccttagaagtcataaatgat
ttgatcacctctgcctcctctagtgcaggaggcagccaaactgttgatcctgcagctggt
aatgtttgctttgctagtggaagtgcaggatggtcattcacacttcagtcatttgctaag
ctatatgtaaagctacatggtattccatttgatgctaacaagttcgcatcgcgtctgtgg
ggggacctctactatcatcctgacactaggaccttcaggaagaaacccccaatgggtgga
ggtgagagatcatttgttcagtttatcctcgaaccattgtacaaaatctacagccaggtg
attggagagcataagaaaagtgttgagaccactctctcagaacttggtgttacattgagc
aatgctgcatacaagttgaatgtcaggcctctgctcagattagcatgcagttctgtcttt
ggttctgccaccggctttactgacatgctagttcagcatatcccctctgccaaagaagct
gcagcaaagaagatagagcatatatacactgggcctcaggattcatatattgctgaggct
atgaaggactgtgatcctactgggcctctgatggttaacatcacaaaactatatcccaag
tcagattgcagtgtctttgatgcttttgggagagtttatagtggtacgatccagactggt
cagacactgcaagtgctgggagaaggttactcgcctgatgatgaagaggaccgaacagtt
aaagaagtgactaagttatgggtcttccaggctcgttaccggattccgatcagtaaagca
cctgctggttcttgggttcttatcgagggtgttgatgcttcgatcatgaagactgcaaca
ttgtgtcctttggatatggaggaagatgtttatatctttagaccacttcgctttaatact
cttccagttgtgaagactgcaactgaaccattgaatccaagcgagttacccaagatggtg
gagggtcttcggaagataagcaaaagctatcccctagctattaccaaagttgaagaatct
ggcgagcacactatacttggaacaggcgagatatatctggattccattatgaaggacctt
agagagctttactcagaagttgaggttaaggtggcggatcctgtagtcactttctgcgaa
actgtggtggagtcttcctcaatgaaatgttttgctgaaacacccaacaagaagaacaag
atcaccatgattgcagagcctctcgaaaggggattggcagatgacattgagaatggtgtt
gtaagtattgactgggatcagaagacgattggtgacttcatgataaaccgctattcatgg
gatattctttctgcgaggtccatatgggcttttggacctgataaacagggaccaaacatt
ttactagatgatactctccccagtgaagtcgacaaaaacttgttgggtgctgttaaagat
tccatagtgcaggggttccagtggggagctcgagaaggacctctgtgtgatgagcccatc
cggaatgtgaagttcaaaatcatggatgcagctattgcagctgagcctcttcaccgaggt
ggtggtcagattattcccactgccagacgtgtggcttactccgcttttctaatggcaaca
ccacggcttatggaacctgtttactatgtggagatacaaacaccaattgactgtgtttct
gcaatttatactgtgttgtctcggaggcgtggtcatgttacagctgacgttcctaagcca
gggacccctgcctatattgtgaaggcttttcttccagttatagagtcatttgggtttgaa
accgatctaagataccatacccaagggcaggcattttgcatgtcgttgtttgaccactgg
gctatagttcctggtgatccacttgacaaaagtatagttttgcggccattggaaccagca
ccgatccagcatcttgctcgagaattcatggtgaaaacaagacggagaaagggaatgagt
gaggatgttagcatcaacaaattctttgatgaggctatggttgtcgagcttgctcaacag
gctgcggaacttcacttgcagatgacttga
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