Asparagus officinalis (garden asparagus): 109848512
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Entry
109848512 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
109848512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848512
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109848512
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
109848512
NCBI-ProteinID:
XP_020273619
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All DBs
Position
7:complement(136604772..136624267)
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AA seq
927 aa
AA seq
DB search
MGVPAFYRWVADRYPLSIADVIEDEPMEVDRGVDLTKPNPNGVEFDNLYLDMNGIIHPCF
HPERRPSPTSYHEVFNSIFGYIDHIFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAK
DAAETAAEEERLRQEFEAEGRKTFKEKSETSDSNVITPGTEFMASLSVALQYYIHLRLNR
TPGWQSTKVVLSDSNVPGEGEHKIMTYIRLQRNLRGFNPNTHHCLYGLDADLIMLSLATH
EVYFSILREVVTMPGQQEKCFSCGQVGHLAAECSGSEANDKIYIPIHKKKYQFLNIWVLR
EYLENDLAISDPPFEINFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMFIYRRD
FSAMGGYLTDAGEVSLERVEHFIQSVAVYEEQIFQKRTRIQRAYENNEGLKLKMQRESSV
DVPSTPMTVDKVKLGEPGYKERYYIEKFEIEESESIDDIKKDVVQNYVEGLCWIMRYYYQ
GVCSWQWFYPYHYAPFASDLKGLADMEITFFPGHPFKPFDQLMGTLPAASSNALPKLYGS
LMTDPNSPLKEFYPKDFKVDMNGKRFAWQGIAKLPFIDERLLLSETKNLEDTLTEEEKYR
NRKMFDILYVYERHPLAAQVASLYHLYSRSLEGQSYCIQINPAYSDGMNGFLCLCERNSY
NTSVSFPLERWNTVENNRVLNATYLNPKNHQHIPEPPEGVIMPVKVVKPQDIKPFPVLWH
EDNRRHQSRERPQVSGVITGSRLGAAAHRLVINSLQTNFNGNARXSELASRNYPQMITRP
RPAGSLGYERGFKESNIRHHYSGPIPRAISNFRPVNFFNETHLGRQNFNYQEQYYNLRTG
MSNFSIEEGASFQSYARTQNSGPFSNQQQNVHRPGPPPSLPPTNWNGSEQQTSSRAIYDK
QQQQQMSKGHRIKSQAPENSSDFARQY
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggctttctaccgatgggtcgccgatcgctaccctctctcgatcgccgac
gtgatcgaggacgagcccatggaggtggatcgaggcgtcgatctcacaaaacctaaccct
aatggcgtcgaattcgataatttgtatcttgacatgaacggaatcattcacccctgcttt
catcccgaacgaaggccttcacctacctcttatcatgaagttttcaattctatctttggc
tatattgatcatatatttgggcttgttcgccccagaaagctgctgtacatggcaattgat
ggtgtagctcccagggctaaaatgaatcagcaaagatctcggcgtttcagagctgcaaaa
gatgcagctgaaacagccgcagaagaggagagactgagacaggagtttgaggctgaagga
agaaaaacatttaaagagaaatctgaaacatccgactctaatgttattactcctgggact
gagttcatggcttccctctctgttgcacttcaatattacatacatttgagattgaaccgg
actccaggatggcagtctacaaaggtagtcttatctgattcaaatgttcctggcgaagga
gagcacaaaatcatgacctacatacggctgcagcgtaatcttcgtggttttaatccaaac
acgcaccattgtctatatggattggatgcagatctgataatgctctctcttgctacacat
gaagtttatttctcaattttaagagaggtggttacaatgccagggcaacaggagaaatgc
ttttcctgtggtcaagttggacatcttgcagctgaatgtagtggatccgaagcaaatgac
aagatttatattcccattcacaagaagaaatatcagttcctgaacatctgggtcttgcgg
gagtacttggagaatgatctggccatatcagatcctccgtttgagataaactttgaacgt
attgtggatgattttgttttcatgtgcttctttgtgggaaatgactttttaccacacatg
cccactcttgaaatccgtgagggcgcaatcaatctgctcatgtttatctatagaagggat
ttctcagcgatgggcggttacctcactgatgctggggaggtgtctctggagagggtcgag
cattttattcagtcagttgcagtttatgaagaacaaatctttcagaagcgtacacgtatt
caacgggcttatgagaataatgaaggactgaagcttaaaatgcaaagggaaagttctgta
gatgttccatctacacctatgactgtggacaaggtaaaattaggtgaacctggatacaaa
gaaaggtattacatcgagaaatttgaaatagaagaatcagagtcaattgatgacatcaag
aaggatgttgttcagaactatgtggaaggtctctgttggatcatgcgatattactaccaa
ggtgtttgctcttggcaatggttttacccttatcattatgccccttttgcgtctgatctc
aaaggtctggcagacatggagattacctttttcccagggcacccatttaaaccttttgat
cagctaatgggcacattaccagctgcaagctccaatgcactgcctaagctgtatgggtct
ttgatgactgacccaaattcacctttaaaagaattttatccaaaagattttaaagttgac
atgaatggcaaacgctttgcatggcagggtattgcaaaacttccttttattgatgaaaga
cttctgctttctgaaacaaagaatcttgaggacacactaacagaagaagaaaagtatcgt
aatagaaaaatgtttgatatcttgtacgtttacgaaagacatcccctagcggcacaagtt
gcttcactgtaccatctgtattctcggtcattggaaggacaatcatattgtattcagatc
aatccagcatatagtgatggaatgaatgggtttctatgtttatgtgaaaggaacagttac
aatacatcagtttcttttccacttgaaaggtggaacactgttgaaaataaccgagttcta
aatgccacctatctcaatcctaagaatcatcaacacattccagaaccacctgaaggtgtg
ataatgccagtgaaggttgtgaaacctcaagatatcaagcccttccctgtattatggcat
gaagataaccggcgccatcaatctagagaaaggccacaggtttccggagttattactggc
tcaaggctaggagcagcagcacatcgtctggtcataaactctctgcaaaccaacttcaat
ggcaatgcacgangttcagagctcgccagcaggaattaccctcaaatgattacccgacct
aggccagctggatctttaggatatgaaagaggcttcaaggaatctaatattcgtcatcat
tattctggtcctataccccgagctatttcaaactttaggccggttaatttctttaacgaa
acacatctcggcaggcagaactttaattatcaagagcagtactataatctcaggacaggg
atgtcaaatttctcaatcgaagagggagcaagctttcagtcttatgcaagaacacaaaat
tctgggcctttctcaaatcagcagcaaaatgtccaccgtcccggtcctccaccctcacta
cctcccacaaattggaacggtagtgaacaacaaacctcatccagggcaatttatgataag
cagcagcaacagcagatgagcaagggacaccgaatcaaatcacaggcccctgaaaattcg
tcagattttgcaaggcagtattga
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