Antiquaquibacter oligotrophicus: LH407_12330
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Entry
LH407_12330 CDS
T09620
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03030
DNA replication
aog03410
Base excision repair
aog03420
Nucleotide excision repair
aog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH407_12330 (ligA)
03410 Base excision repair
LH407_12330 (ligA)
03420 Nucleotide excision repair
LH407_12330 (ligA)
03430 Mismatch repair
LH407_12330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aog03032
]
LH407_12330 (ligA)
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_12330 (ligA)
Enzymes [BR:
aog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH407_12330 (ligA)
DNA replication proteins [BR:
aog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH407_12330 (ligA)
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH407_12330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH407_12330 (ligA)
MMR (mismatch excision repair)
DNA ligase
LH407_12330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH407_12330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UDF12932
LinkDB
All DBs
Position
2531037..2533325
Genome browser
AA seq
762 aa
AA seq
DB search
MADERATSSQTVVQHADPELTEARAEVQALTTRILELRDAYYERDEVLVSDAEYDAMMHR
LEELEREHPELQGQDSPTQTVGGRAAKLFDPVRHAERMLSLDNVFSIDEFTAWAAKVERD
AGRRVDYLCELKIDGLAINLRYENGRLTSAATRGDGVVGEDVTENIQYIPGIPARLSGTG
HPPLVEVRGEIFFPVESFEELNAEQAASGERVFANPRNAASGSLRQKAEKKSAAALDLMH
RRLSRLRMLVHGIGAWPNPPVASQSEVYALLAGWGLPTSSHFSVRPTAEGAAEFIEYYGA
HRDSVEHEIDGIVIKVDELALHEELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTG
RATPFAVMEPARVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELR
DGTEREFVMPTLCPECGTPLAPAKEGDIDLRCPNTRACPAQVRGRVEHVGSRGALDIEGL
GEVSAAALTQPRVPATPPLETEAGLFSLTLEDLFPIEVVVRDAETGLPRLLENGEPDLRT
PFRKQRKVSGKDADPAYDPDGPFFGDAGAVPSAQAVQLIENIELAKTKELWRFLVALSIR
HVGPVAARALAGYFGSLGAIRAASRDELAAVEGVGPIIADALIDWFAVDWHRDILEAWEA
AGVQFATPGHPGPGAAASVDGPLAGLTVVATGTLEGFTREGATEAIIAAGGKAASSVSKK
TDFVAAGPGAGSKLTKAEQLGVRIIDAEQFAKLLVGGPEALD
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatgagcgcgcgacatcctcgcagaccgtagttcagcacgcagaccccgaactg
accgaggctcgggccgaagtccaggccctcaccacgcgcatcctcgagctacgcgacgcg
tactacgagcgcgacgaggtgctcgtcagcgacgcagagtatgacgcgatgatgcaccgc
ctcgaggaactcgagcgcgagcatccggagctccagggtcaggacagccccactcagact
gtcggtggacgggcggcgaagctcttcgacccggtgcggcacgcggagcggatgctgagc
ctcgacaacgtcttcagcatcgacgaattcacggcgtgggccgccaaggtggagcgggac
gcaggccggcgcgtcgactacctgtgcgaactcaagatcgacggactcgcgatcaacctg
cgctacgagaacgggcgtctcacgagcgcggccacccgcggcgacggggtcgtgggggag
gacgtcaccgagaacatccagtacatcccgggtatccccgcgcggctgtcgggcaccggg
catccgccgctcgtcgaagtgcgcggcgagatctttttccccgtcgaatcattcgaagag
ctcaacgccgagcaggcggcatcgggggagcgtgtgttcgcgaacccgcgcaacgcagca
tccggttcactgcgtcagaaggccgagaagaagtcggcggcggccctcgatctcatgcac
cgcaggctgtcgaggctccggatgctcgtccacggcatcggggcatggccgaacccgccc
gtcgccagccagagcgaggtgtacgcactcctcgccggctggggacttccgacgagctcg
cacttctccgtgcgcccgacagccgagggtgctgcggagttcatcgagtactacggggca
catcgcgacagcgttgagcacgagatcgacggcatcgtcatcaaggttgatgaactcgca
ctgcacgaagaactcggggcaacctcgcgcgcaccgcgatgggcgatcgcgtacaagtac
ccaccggagcaggtcaacacgaagctgctcgacatcgttgtctcggtcgggcgcaccggg
cgagcaacgccgttcgccgtcatggagccggcgcgcgtcgccggttcggtggtgcgccaa
gcgaccctccacaatcaggacgtcgtcaaggccaagggtgtactcatcggagacaccgtt
gtgctgcgcaaggcgggcgacgtcatccccgaggtgctcgggccggtcgtcgaactgcgt
gacggcacggagcgcgagttcgtcatgccgaccctctgcccggagtgtggaaccccgctc
gccccggcgaaggaaggcgacatcgaccttcggtgccccaacacgagggcgtgcccggca
caggttcgcggtcgtgtcgagcatgtcggcagcaggggcgcgctcgacatcgagggactc
ggtgaggtgagtgcggccgccctcacgcaaccccgagtgcccgcaacgccgcccctggag
accgaagccggactgttctcgctcacgctcgaggacctcttccccatcgaggtcgtggtg
cgggatgccgagaccgggctgccacgcctcctcgagaacggcgaacccgacctccggacc
cccttccgcaaacagcgcaaggtcagcggaaaggatgccgaccccgcgtacgacccagac
ggtccgttcttcggggacgccggggcggtgccctccgcacaggcagtccagctcatcgag
aacatcgagctggccaaaaccaaggaactgtggcgcttcctcgtggcgctatcgatccgt
cacgtcgggccggttgcggctcgggcactggcaggctacttcggttcgctcggagccatc
cgtgccgcatcccgcgacgagttggccgccgtcgagggagtaggcccgatcattgcggat
gccctcatcgactggttcgccgtcgactggcaccgcgacatcctcgaagcgtgggaggcc
gcgggagtgcagttcgcgacccccgggcatccggggccgggagccgctgcatccgtcgac
ggcccgctcgccgggttgacggtggtagccacgggcacactcgagggcttcactcgcgag
ggtgccaccgaggcgatcatcgcggcgggcggcaaagcggcctcgagcgtcagcaagaag
acagacttcgtggctgccgggcccggggcagggtccaagctcaccaaagctgagcagcta
ggggtgcgaattattgacgcagagcagtttgcaaaactgctggtcggagggcccgaagcg
ctcgattag
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