Amycolatopsis keratiniphila: AORI_6253
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Entry
AORI_6253 CDS
T02678
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03030
DNA replication
aoi03410
Base excision repair
aoi03420
Nucleotide excision repair
aoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AORI_6253 (ligA)
03410 Base excision repair
AORI_6253 (ligA)
03420 Nucleotide excision repair
AORI_6253 (ligA)
03430 Mismatch repair
AORI_6253 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoi03032
]
AORI_6253 (ligA)
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_6253 (ligA)
Enzymes [BR:
aoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AORI_6253 (ligA)
DNA replication proteins [BR:
aoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AORI_6253 (ligA)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AORI_6253 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AORI_6253 (ligA)
MMR (mismatch excision repair)
DNA ligase
AORI_6253 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AORI_6253 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGM08836
UniProt:
R4T941
LinkDB
All DBs
Position
complement(7041691..7043811)
Genome browser
AA seq
706 aa
AA seq
DB search
MSSELPENIEPAQDVTDVPADVRERHAELAEEIRGHQFRYYVLDSPIVSDGQFDELLNEL
QAIEDEYPGLVTPESPTQNVGGTFSTEFVAHDHLERMLSLDNVFDPEEFEAWVERVQKEI
GATKYLAELKIDGLAINLLYENGRLTRALTRGDGRTGEDVTLNVRTLEQVPERLTGTDEF
PVPALVEIRGEVYFRVEDFLALNAKMVEAGKDPYANPRNTAAGSLRQKDPKITKSRNLRL
ICHGLGKREGFEPKRQSEAYDALAAWGLPVSPHSKVLTSGKELLEHIQYWGEHRHDAEHE
IDGVVIKVDEVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVNVGRTGRVTPFAVM
EPVKVAGSTVAMATLHNQEEVKRKGVLIGDKVVIRKAGDVIPEVLGPVADARTGEEREFV
MPLRCPNCDTELAYQKEGDIDIRCPNAQFCPAQRRERLFHLASRNVFDIEVVGYEAAVAL
LDAGVVHDEGDIFDLDEEKLLQVELFRTKAGELSANGRKLLENLETVKDRPLWRVIVGLS
IRHVGPTAAQALAREFGSLERIENASEEELAAVDGVGPTIVRAAKEWFEVDWHREIVEKW
RAAGVRMEEERDESVPRNLEGLSIVVTGSLNDYSRDEAKEFIMARGGKAAGSVSKKTAFV
VVGDAPGSKYDKAVQLKVPVLDENGFRVLLEDGPEAAAELALPADE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaacttcccgaaaacatcgagccggcgcaggacgtcaccgacgtgcctgcc
gacgtccgtgaacggcatgccgagctggcggaggagatccgcgggcaccagttccggtac
tacgtgctggattcaccgatcgtgtccgacggccagttcgacgagctgctcaacgaactc
caggccatcgaggacgagtatccggggctggtgacgccggagtcgccgacgcagaacgtc
ggcggcacgttctccaccgagttcgtcgcgcacgaccacctcgagcgcatgctcagcctc
gacaacgtcttcgaccccgaggagttcgaagcctgggtcgagcgggtccagaaggagatc
ggcgcgacgaagtacctcgccgaactgaagatcgacgggctcgcgatcaacctgctgtac
gagaacggccgcctgacccgcgcgctgaccaggggcgacggccgcaccggcgaggacgtc
acgctcaacgtccgcacgctggagcaggtgccggagcggctgaccgggacggacgagttc
ccggtgcccgcgctggtcgagatccgcggcgaggtgtacttccgcgtcgaggacttcctg
gcgctgaacgcgaagatggtggaggcgggcaaggatccgtacgcgaacccgcgcaacacc
gccgccgggtcgttgcggcagaaggatcccaagatcacgaagtcgcgcaacctgcggctg
atctgccacgggctcggcaaacgcgagggcttcgagccgaagcgccagtccgaggcgtac
gacgcgctcgccgcgtggggcctgccggtctcaccgcacagcaaggtgctgacttcgggc
aaggagctgctggagcacatccagtactggggtgagcacaggcacgacgccgagcacgag
atcgacggcgtcgtcatcaaggtcgacgaggtcgccctgcagcgccgtctcggcacgacg
tcgcgcgcgccgcgctgggcgatcgcctacaagtacccgccggaagaggcgatcaccacc
ctcctggacatccaggtcaacgtcggccgcaccgggcgggtcaccccgttcgcggtgatg
gagccggtgaaggtggccggatccacggtcgcgatggcgacgctgcacaaccaggaagag
gtcaaacgcaagggcgtgctgatcggggacaaggtcgtcatccgcaaggcgggcgacgtc
atccccgaggtgctcggcccggtcgccgacgcgcgcaccggcgaagagcgcgagttcgtc
atgccgttgcgctgccccaactgcgacaccgaactggcgtaccagaaggagggcgacatc
gacatccgttgcccgaacgcgcagttctgtcccgcgcagcggcgggagcggctgttccac
ctggcgagccgcaacgtcttcgacatcgaggtggtcgggtacgaggccgcggtggctctg
ctggacgccggggtcgtgcacgacgagggcgacatcttcgacctggacgaggagaagctg
ctccaggtcgagctgttccgcaccaaggcgggcgagctctcggccaacgggcgcaaactg
ctggagaatctggaaaccgtcaaggatcgtccactgtggagggtcatcgtcgggctgtcg
atccggcacgtcggcccgacggccgcgcaggccctcgcccgggaattcggttcgctggaa
cggatcgagaacgcgtccgaagaggagctcgccgccgtcgatggggtcggccccaccatc
gtgcgggccgcgaaggaatggttcgaggtcgattggcaccgcgagatcgtcgagaagtgg
cgcgcggcgggcgtgcggatggaggaggagcgcgacgagtccgtcccgcgcaacctcgaa
ggcctgtccatcgtcgtcaccggctcgctgaacgactactcccgtgacgaggccaaggag
ttcatcatggcccgcggcgggaaggcggccggttccgtgtcgaagaagacggcgttcgtc
gtcgtgggcgacgcgccgggctcgaagtacgacaaggccgtccagctgaaggtgccggtg
ctcgacgagaacggcttccgcgtgctgctggaagacgggcccgaggccgcggccgagctc
gccctgccggccgatgagtga
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