Alistipes onderdonkii subsp. vulgaris: A3BBH6_24860
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Entry
A3BBH6_24860 CDS
T06406
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aok
Alistipes onderdonkii subsp. vulgaris
Pathway
aok03030
DNA replication
aok03410
Base excision repair
aok03420
Nucleotide excision repair
aok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3BBH6_24860 (ligA)
03410 Base excision repair
A3BBH6_24860 (ligA)
03420 Nucleotide excision repair
A3BBH6_24860 (ligA)
03430 Mismatch repair
A3BBH6_24860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aok03032
]
A3BBH6_24860 (ligA)
03400 DNA repair and recombination proteins [BR:
aok03400
]
A3BBH6_24860 (ligA)
Enzymes [BR:
aok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3BBH6_24860 (ligA)
DNA replication proteins [BR:
aok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3BBH6_24860 (ligA)
DNA repair and recombination proteins [BR:
aok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3BBH6_24860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3BBH6_24860 (ligA)
MMR (mismatch excision repair)
DNA ligase
A3BBH6_24860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3BBH6_24860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
PTCB-BRCT
RNA_ligase
RNA_pol_A_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBL02250
LinkDB
All DBs
Position
complement(2989714..2991831)
Genome browser
AA seq
705 aa
AA seq
DB search
MIRERVEELRRQLEYHNFRYYVENAPEISDFEFDTMMRELQDLERAHPELSDPNSPSVRV
GSDITSEFRSVKHRFPMLSLGNTYSLDELHEFIARIEKEAGPTEFVCELKFDGTAISLTY
EDGRLLRAVTRGDGSQGDDVTANVRTVRTVPLRLRGDDWPPYFEIRGEILMPYASFDKIN
AEREAAGETLFANPRNAAAGTLKQQASSVVARRGLDCTLYQLAGDGLPFTNHWESLQKAR
EWGFKVSDAARICRTAEQIDAYIAHWDEGRHALPFPTDGVVIKVNDFAVRRQLGFTAKAP
KWAVAYKFKAEQALTRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHNAEQMALL
DIRPGDMVYVEKGGEIIPKITGVDLSQRPADSKPFEYITVCPECGTPLVRYEGEAKHYCP
NQGGCPPQIVGRIIHFIRRKAMDIEGLGEETVELLYENGLVHDVADLYDLKAGQLAELPR
LGEKSADNIIRSIRGSVEVPFRRVLFGLGIRFVGETTAKYLAEHFRSLDAVMRATREELT
QADEVGGRIADAIIEYFADEQNHAIIRRLRAAGLKFEEEARELASESLAGRSFVVSGKFS
RSRDEMKELIEMHGGRNLAAVSANVDYIVAGDNMGPAKLRKAEKLGVKIISEEEFIAMVG
GQEAPAANGTEADSATTANTGGRNNGAPAATESGDGEPVQQGELF
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgatacgcgagagagtcgaagagctgcggcggcagctcgagtaccataacttcagatat
tacgtcgaaaacgcccctgagatctccgacttcgaattcgacacgatgatgcgcgaattg
caggatctggaacgggcgcaccccgaactgtccgaccccaattcgccctcggtgcgtgtc
gggagcgacatcacgtcggagttccggagcgtaaagcaccggttcccgatgctttcgctc
ggcaacacctattcgctcgacgaactgcatgaattcatcgcccgcatcgaaaaggaggcc
gggccgacggagttcgtctgcgaactgaaattcgacggcacggccatatcgctcacctac
gaggacgggcggctgctgcgtgccgtgacgcgcggcgacggctcgcagggcgacgacgtg
acggccaacgtacgtacggtgcgcacggttcccctgcgcctgaggggcgacgactggccg
ccctacttcgaaatacggggcgagatcctgatgccctacgcctcgttcgacaaaatcaac
gccgagcgcgaggcggccggggagacgctcttcgcaaacccgcgcaacgccgcggcgggg
acgctcaagcagcaggcgtcgtcggtggtcgcacgccgcggcctggactgcacgctctac
cagttggcgggcgacggcctgcccttcacgaaccactgggaaagcctgcagaaagcccgc
gagtggggattcaaagtctcggacgcggcgcgcatatgccgcactgcggagcagatcgac
gcctacatcgcgcattgggacgaggggcgccatgccctgcccttcccgaccgacggcgtg
gtgatcaaggtcaacgacttcgccgtaaggcggcagctgggattcacggccaaggccccg
aaatgggccgtggcctacaagttcaaggccgagcaggcgctcacgcggctggacagcgtg
tcgttccaggtgggacgcacgggagccataacgcctgtggcgaacctcgaaccggtgctg
ctggccgggacgaccgtgcggcgtgcgacgctgcacaacgccgagcagatggccctgctg
gacatccgcccgggcgacatggtatacgtcgagaagggcggcgagatcatccccaagatc
acgggggtagacctctcgcagcggcctgcggacagcaaaccgttcgaatacatcaccgta
tgccccgaatgcggcactccgctggtgcgctacgagggcgaggcgaagcactactgcccc
aaccaggggggatgcccgccgcagatcgtcgggcgcatcatccatttcatccgccgcaag
gcgatggacatcgaggggctgggcgaggagaccgtggaactgctctatgaaaacgggctg
gtgcacgacgtggccgacctctacgacctgaaggccggacagctggcggaattgccgcgg
ctgggcgagaagtcggccgacaacatcatacgcagcatccgcggatcggtcgaggtgccc
ttccgccgcgtgctgttcggactcggcatccgcttcgtgggcgagacgacggccaaatac
ctggccgagcatttccgctcgctcgacgccgtgatgcgggccacgcgcgaggagctgacc
caggccgacgaggtgggcgggcgcatcgccgacgcgatcatcgaatatttcgccgacgag
cagaaccacgccatcatccgccgcctgcgtgccgcggggctgaagttcgaggaggaggcg
cgggagctggcgtcggagtcgctcgcaggccgcagtttcgtggtgtcgggcaagttctcg
cgcagccgcgacgaaatgaaggagctgatcgaaatgcacgggggcaggaacctcgcggcc
gtatcggccaacgtcgattacatcgtggcgggcgacaacatgggcccggcgaagctcagg
aaggccgagaagctgggcgtgaagatcatttccgaagaggagttcatcgccatggtcggc
gggcaggaagccccggcggcaaacgggacggaagccgacagcgcaacaacggcaaatacc
ggaggcaggaacaatggcgccccggccgcgacggaaagcggggacggcgaacccgtccaa
caaggcgagttgttctga
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