Aquabacterium olei: DEH84_09590
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Entry
DEH84_09590 CDS
T05429
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aon
Aquabacterium olei
Pathway
aon03030
DNA replication
aon03410
Base excision repair
aon03420
Nucleotide excision repair
aon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DEH84_09590 (ligA)
03410 Base excision repair
DEH84_09590 (ligA)
03420 Nucleotide excision repair
DEH84_09590 (ligA)
03430 Mismatch repair
DEH84_09590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aon03032
]
DEH84_09590 (ligA)
03400 DNA repair and recombination proteins [BR:
aon03400
]
DEH84_09590 (ligA)
Enzymes [BR:
aon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DEH84_09590 (ligA)
DNA replication proteins [BR:
aon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DEH84_09590 (ligA)
DNA repair and recombination proteins [BR:
aon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DEH84_09590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DEH84_09590 (ligA)
MMR (mismatch excision repair)
DNA ligase
DEH84_09590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DEH84_09590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
5_3_exonuc
DUF4796_N
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
AWI53658
UniProt:
A0A2U8FS72
LinkDB
All DBs
Position
complement(2116667..2118796)
Genome browser
AA seq
709 aa
AA seq
DB search
MSQSNVSGGAPTAPPGDDLPTPAEQAATLRAQLHEHAHRYYVLDEPAIPDAEYDRLFQAL
QTLEETYPELRTFDSPTQRVLGKVLEGFTPVRHAVPMLSIRTETDTEATGAEAFDGRVRR
ELELPDEAPAVEYAAELKFDGLAINLRYEQGVLVRAATRGDGETGEDVTQNIRTIRQIPL
RLKGEGAPAVLEVRGEVYMRRDDFETLNARQREHGDKTFVNPRNAAAGAVRQLDPGIAAR
RPLSFFAYGLGEVQGWDMPATHSGVLDALAAWGLPVSSERTVAQGAAGLVAFHQAIGARR
DGLPFDIDGVVYKVNSLALQARLGFVTREPRWAVAHKYPAQEQLTQVEGIDIQVGRTGKL
TPVARLKPVFVGGVTVTNATLHNLFELRRKRVRVGDTVIVRRAGDVIPEVVGVVAGERPA
YVPNFRMPAHCPVCGSDVVRERAEVDHRCSGGLFCAAQRKQALLHFAQRRAVDIEGLGDK
LVDQLVDGGLVRTLPELYKLGLMKLAALDRMATKSAQNLVDALEKSKHTTLPRFLFGLGI
RHVGEATAKDLARHFGGIDRIMDATEAQLLEVRDVGPVVAHSIRTFFDQAHNREVVEQLR
ACGVTWPEHEPAADPASLPLSGQTFVLTGTLPTLSRDEAKALIEAAGGKVAGSVSKKTHH
VVAGAEAGSKLEKAQSLGVSILDEDGLRALLALAGSVAGGAVGEEADQS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatccaacgtgtccggcggcgctccgacggccccgcccggcgacgacctgccc
acgccggccgagcaggctgccacgctgcgcgcgcagttgcacgagcacgcgcaccgctat
tacgtgctggacgaaccggccattcccgacgcggaatacgaccggctcttccaggcgttg
cagacgctggaggaaacctaccccgagctgcgcacattcgattcaccgacgcaacgcgtg
ctgggcaaggtgctggagggcttcacgccggtgcgccacgcggtgcccatgctgtccatc
cgcaccgagaccgacaccgaggcaaccggcgccgaggccttcgatggccgtgtgcggcgc
gagttggagctgcctgatgaagcaccggccgtcgagtacgccgccgagctgaagttcgac
gggctggccatcaacctgcgctatgagcagggcgtgctggtgcgcgcggccacacgcggc
gatggtgagacaggcgaagacgtcacacagaacatccgcaccatccgacagattccgctg
cgcctgaaaggcgagggcgcgccagcggtgctggaggtgcgcggcgaggtctacatgcgc
cgtgacgacttcgagaccctgaacgcccggcaacgcgaacacggcgacaagaccttcgtg
aacccgcgcaatgcggcggccggcgccgtccgccagctggatccgggcatcgccgcccgc
cgcccattgagcttcttcgcctatggactgggtgaggtccagggctgggacatgccggcc
acgcacagtggtgtgctggatgcactggctgcgtggggcctgccggtcagcagcgagcgt
accgtggcgcaaggcgcagctggcctcgttgcctttcaccaggccatcggggcgcggcgc
gacggcctgcccttcgacatcgacggtgtggtctacaaggtcaacagcctggccttgcag
gcccgactcggtttcgtgacccgcgaaccacgctgggccgtggcccacaagtaccccgca
caagagcagctcacccaggtcgaaggcatcgacatccaagtgggccgcacgggcaagctg
accccggtggcgcgcttgaagcccgtgtttgtcggcggcgtgacggtcaccaacgcgacg
ctgcacaacctgttcgagttgcgccgcaagcgcgtgcgcgtgggtgacacggtgatcgtg
cgacgcgccggcgacgtcatcccggaagtggtgggcgtcgtggccggcgagcgcccggcc
tacgtgcccaacttccgcatgcccgcgcactgcccggtgtgcggcagcgatgtggtgcgc
gaacgcgccgaggtggatcaccgctgctcaggtggcctgttctgcgccgcgcagcgcaag
caggcgctgctgcactttgcccagcgccgcgccgtggacatcgagggcctcggtgacaag
ctggtggaccagctggtcgatggcggtctggtccgcacgctgcccgagctgtacaagctc
ggcctgatgaagctggccgcgctggaccgcatggcgaccaagagcgcgcagaacctggtg
gacgcgctggaaaagagcaagcacacgaccttgccgcgttttctgttcggcctgggcatc
cgccacgtgggcgaggccacggcgaaagacctggcacgccatttcggcggcatcgaccgc
atcatggacgccaccgaggcgcagttgctggaggtacgcgacgtgggcccggtggtggca
cacagcatccgcaccttcttcgaccaggcgcacaaccgcgaggtggtggagcaactgcgt
gcgtgcggtgtgacctggcccgagcacgagccggcggccgacccggccagcctgccgctg
tcagggcagacctttgtgctgacgggaacgctgcccacgctcagccgcgatgaggccaag
gccctgatcgaagcggcggggggcaaggtcgccggctcggtctcgaagaagacgcatcac
gtcgtggccggcgcggaggccggcagcaagctcgagaaggcgcagagcctgggggtgtcc
atcctcgacgaggatggcctgcgtgcgctgctggctctggcgggcagcgtggcaggtggc
gcggtcggcgaagaagccgatcagtcctga
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