Anastrepha obliqua (West Indian fruit fly): 129238778
Help
Entry
129238778 CDS
T09777
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129238778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129238778
Enzymes [BR:
aoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129238778
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129238778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
129238778
NCBI-ProteinID:
XP_054729929
LinkDB
All DBs
Position
2:complement(69621927..69625647)
Genome browser
AA seq
926 aa
AA seq
DB search
MDISKNIKFADICSMLDKVKNAKNQASKEKILRRYYESFLKFRQIFRKEQGIPVDSPEDG
SSSFFCVLRCLIPREDMSRKAYGLQITTLGSVYSDVLQLSKDSNDVQRLQARAYNGSQGD
YADIVYAVLMPRCRHEPSELSLYEVHQMLDSIAEDDRQDTKKVLTRLTEIASAQEQMWFI
RLLLKNMHLGIGAQRIFALMHAQARDLHRRCSNLKRVCCLLADNKIDSVYIKAEVVPGDS
KINVASGTFNINKIVEPFQHIQGMLCEKFHGSIDKLMADDVLYLETKMDGERFQLHYANG
RFKYISRNGIDYTQCFGEDYKSGRFTPLLQSLLPSEMQSIILDGEMMVYDMQLKCFRDKG
ENTDVKHLDNKLNWRPCFVVFDVLYFNGNSMLEMPYAQRCQKVVELIRVQQPGILQIMRP
TKLTTVEQFRQLFQQALDEKQEGVVLKKQNSIYRPKIRNGSGWYKIKADYITGLTTEFDL
LVIGGFYNRTRTFIKSFLLGVLKYISDTQFAVYSVGKVDNTTRERKRLNDALKPHWQDRQ
MEPPPDWYNYKQSRAEGRPDVWIEPNKSVILQIRATDLAPSAAFALPKSLHFPRIEWWRN
DKMWNECLSLHDYMEMFQGERGLKKIHKRGVELGDLTAPQKIRKLTDAERRKLGRQSYER
RFNEAEIEVSSKLFEGYSFCILSASLKNGYMPETLKAMVVRNGGEIVEYPIQDSNCLSVA
GDRTFRVKLLCKSRRYNIAKLEWLVDTCKRQEMQLTPTDMVCVTNELETEFSQIFDKYGD
PYTECTDVEQLMKVLDGITDEDLAVVEPSAADAAELEMILYDENTDFFSNCNATFYSIDQ
YTQLAKVIYQYLGGRCYDVPNDVNIQSINYVFINANLIDKVKLKAWILKRFKNHSGNLHV
VNIAWIIHSQRAKRKLDAFEYMCNYF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggatatctcgaaaaatataaaattcgccgatatctgttcgatgctcgacaaagtgaag
aatgctaaaaatcaagcttcaaaagaaaagatattacgtcgctattatgagtcgtttcta
aagtttcgacaaatattccgcaaagaacaagggatccctgtggatagtcctgaggatggc
agctccagttttttctgcgtgctcagatgtctgattccgcgggaagacatgtcacgaaag
gcatatggattgcaaataacaacgctcggtagcgtgtacagtgacgtactacagctttcg
aaggattccaacgatgtgcagcgtttacaagcgcgtgcctataatggatcacaaggggac
tatgcagatatcgtatatgcagtgctgatgcctcgttgcaggcacgaaccaagtgaactc
tctctgtacgaagtgcatcagatgttagattctattgctgaagacgatcgacaagataca
aaaaaggtactaacccgattaactgaaatagcctcggctcaagagcaaatgtggttcata
cgcctactgctgaagaacatgcacctcgggattggcgcacaacgtattttcgcgctcatg
catgcacaagctagagatttgcatagacgttgctcaaatttgaagcgcgtgtgttgtctg
ctggcggataataaaatagatagtgtatacataaaagcagaagtcgtacctggcgattcg
aaaataaatgtcgccagcggcacctttaatataaataaaattgtagaaccctttcaacac
atacagggaatgttgtgtgaaaagtttcatggtagtattgacaaattaatggctgatgac
gtgctttacttagagacaaaaatggatggtgaacgttttcaactgcattatgcaaatggg
cgtttcaaatatatatcccgcaacggaattgattacacccaatgcttcggtgaagactat
aagagtggtaggttcacgcctctacttcagtcgctcttacctagcgaaatgcagtccata
atactcgatggcgaaatgatggtatacgatatgcagctaaaatgctttcgtgacaaaggc
gagaatacagacgttaagcatttggataacaaattgaattggcgaccttgttttgtggta
ttcgatgtgctctactttaatggcaatagtatgttggaaatgccatacgcacaacgctgc
cagaaggtcgtcgagcttattagagtacagcagccaggaatattgcaaatcatgcggcca
actaagttaacaacggtggagcagtttcggcagctctttcagcaagcattggatgaaaaa
caggagggagtcgtgctgaagaagcaaaactctatctaccgcccaaaaatacgcaatgga
agtggctggtataaaataaaagccgattacattactggattgacaactgagttcgattta
cttgtaattggtggtttctacaatcgaacgcgtacatttattaagtcttttttgctaggt
gtgctcaaatacatctcggacacacaatttgccgtttacagcgtcggtaaggttgacaat
acaaccagggagagaaagcggctgaatgacgctctcaaaccgcattggcaagataggcaa
atggaaccaccacccgattggtataattataaacagtcccgtgctgaaggcagacctgat
gtgtggattgagccaaacaaatctgtaatattgcaaatcagagcaactgatttggcacct
tctgcagcctttgctcttcctaaatcgttgcatttcccgcgcatagaatggtggcgtaac
gacaaaatgtggaatgagtgtctttcgctgcacgattacatggaaatgtttcagggtgaa
aggggtctcaaaaagatacataagcgcggcgttgaattgggagatttaacggcaccacaa
aagatacgtaaattaactgacgcagagcgtcgtaaattgggccgccagtcctatgagcgc
cgttttaatgaagctgagattgaagtatcttcaaagctattcgaagggtactcgttttgc
atactgagtgcaagtttaaagaacggctatatgccggagacactaaaagcgatggtggtc
cgtaatggcggtgaaatagtagaatatcccatacaagactccaattgtttatcagttgcg
ggtgatagaacctttcgtgtcaagcttttgtgtaaatcgcggcgttacaatattgcaaaa
ttggagtggttggtagacacatgcaaacgacaggaaatgcaattaactcccacagatatg
gtttgtgtaacgaacgagttagaaactgaattttcgcaaatattcgataaatatggcgac
ccatatacggaatgtacagatgttgagcaattgatgaaagtcttggatggtattacagac
gaagatcttgcagtcgtggagccttcagccgcagatgcagctgaacttgaaatgatttta
tatgatgaaaacacggatttctttagcaattgcaatgctacattctacagcatagatcag
tatacgcagctagcaaaagtgatttaccagtatttaggaggccggtgctatgatgtccca
aatgatgttaacattcaaagtattaattacgttttcatcaacgcaaatttaattgataaa
gttaaattgaaagcgtggatcttaaaacgttttaagaatcattcaggaaatttgcatgtt
gtaaatattgcttggataatacattcgcagcgcgctaaaaggaagctggatgcattcgaa
tatatgtgcaattatttttag
DBGET
integrated database retrieval system
