Aspergillus oryzae: AO090011000636
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Entry
AO090011000636 CDS
T01018
Name
(RefSeq) unnamed protein product; cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aor
Aspergillus oryzae
Pathway
aor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO090011000636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aor03019
]
AO090011000636
Enzymes [BR:
aor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AO090011000636
Messenger RNA biogenesis [BR:
aor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AO090011000636
mRNA degradation factors
3'-5' decay
Ski complex
AO090011000636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
5998341
NCBI-ProteinID:
XP_001826238
UniProt:
Q2U010
LinkDB
All DBs
Position
7:complement(1634370..1638453)
Genome browser
AA seq
1298 aa
AA seq
DB search
MAQAEALAATLAELNLNAQGLSGSAFDDRLAEEESGQYQNRGPRPRARQNAEDLIKELEA
DFLTPSSQFSPEWLNRLQRRWDVSTDYKDLFEVAPTQTRTIVRFDREGLEGRVTGYHEVT
VPATSANAKNSTSLLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQTADSSRP
GGKPSGLDRIINFGAEGGLLEVAPGFSRGLKFEVAKSKEAAENDQEVEHVLQQEEADLPV
EKDDTASDVGGVKIDDDELSGDEEDIDSLLPVEFPALEPRAPLLSGVQKKGGREWAHVVD
VNKDIPNFSELVPDMAREWPFELDTFQKEAVYHLESGDSVFVAAHTSAGKTVVAEYAIAL
AAKHMTKAIYTSPIKALSNQKFRDFRTTFDDVGILTGDVQINPEASCLIMTTEILRSMLY
RGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVG
RTKKKDIYVISTAKRPVPLEHYLWAGKDKFKIVDSNKRFLEGGWKEADNIISGRDKIKAQ
KAAEAQAQSQAQRGGQQGRGRGQAPGRGGPRGNSQRGGAQRGGGAQRGRGQPATRGTGNI
ARTGRGGGRTTAAQDKTVWVQLVQHLRKENLLPGCIFVFSKKRCEENADSLSNQDFCNAS
EKSLTHMFIEKSLTRLKPEDRTLPQILRLRDLLSRGIAVHHGGLLPIMKEIVEILFAKSL
VKVLFATETFAMGLNLPTRTVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDTVGYV
IITSTGKDEAPPAGALKRMILGEPTKLRSQFRLTYNMILNLLRVEALRIEEMIKRSFSEN
ATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHNAAMEYGKLTSELHVGLLASP
VGKRLFMPKRLVVYRKDGYRTAGIIVREGVGGGPTPTVQILEIGKLGGRRHPSDILPFLP
KFRHLFQTLPTRGADMTLKVCKIPLSDLECLTNTMVKLTGPTWYLNIKKEAIKFADKELH
KYCGSWTSTAWDEIDWTRIKELQVRDILEKRQAQATIAESCKCLQCPDFLKHFEMQHDEW
QVKENISQLKQLMSDQNLQLLPDYEQRIQVLKELGFVDEQSRVQLKGKVACEIHSADELV
LTELVLENVLAEYEPEEIVALLSAFVFQEKTENVPTLTPRLEKGKEAIVKISEKVNDFQI
QYQVIQSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDLTDVMEGTIVRTITRLDETC
REVKNAAKLVGDPSLYTKMQQAQELIKRDVIFAASLYM
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcagaagctctcgctgccactctagctgagctaaacctgaatgcacagggt
ctcagcgggtcagcttttgatgatcgacttgcggaagaagaaagtggtcaatatcagaac
cggggtcctcggccaagagcccgccaaaatgctgaagatcttattaaagagctggaggct
gacttcctcactccatcatctcagtttagccctgaatggctgaatcgtctacaaagacga
tgggacgtgtcgacagactacaaggacctttttgaggtcgcaccgactcaaacacgaact
attgttcgttttgaccgtgagggtctagaagggcgtgttactggctaccatgaagttacg
gttcccgccaccagtgcaaatgcaaagaactcaacatctctgcttcgtcgaccagctggt
cgcgcagatttcgtcagaggcgccgctggattctttcccttcgcgccaggtggacttgat
ggtgttgaggctatcgctgaaatggaatctgaagcccagacagcagatagctcgagaccg
ggaggcaagccatctggccttgaccggatcattaacttcggcgctgagggtggccttcta
gaagtcgctcctgggttcagccgtggcctgaaattcgaagtagcaaagtcaaaagaagct
gctgagaatgatcaagaagttgaacatgtcctccagcaggaggaagcggatctcccagtt
gaaaaggacgacacggcttcagatgttggaggagtgaagattgacgatgacgagctgagc
ggagatgaggaggatatagattcattactgcccgttgagttcccagcactggaaccccgt
gctcctttgttatcaggtgtccagaagaaaggtggcagggaatgggcgcacgttgtggat
gttaacaaagacattccaaatttcagcgagcttgtgccggatatggctagagagtggccc
tttgaactggacaccttccagaaagaggctgtttaccatttggagagcggtgattccgtt
tttgtcgcggctcatacgtcagcgggaaagacagttgttgctgaatatgctattgctttg
gctgccaagcatatgactaaggctatctacacatcacccatcaaggctctcagtaatcag
aaattcagggattttaggactacattcgacgatgttggtatccttacgggtgacgtccag
atcaatccagaagcaagctgtctgatcatgaccactgaaattctccgaagtatgctttat
cgtggagcagatcttattagagatgtcgagttcgtgatctttgatgaggtacattatgtt
aatgatctcgaaagaggcgtcgtttgggaagaagtgatcatcatgcttcctgaacatgtc
actctgattcttctatctgctacggtccctaatacttatgaatttgcctcttgggtgggt
cgcaccaagaagaaggatatctatgttatttcgactgcgaaacgacctgtcccgctcgag
cactatttgtgggcgggtaaagataaattcaaaatcgtcgactcaaataagcgattcctg
gaaggcggttggaaagaagcagataacattatctctggccgagataagatcaaagcccaa
aaagctgccgaggctcaggctcaatcccaagctcagagaggcggccagcagggaagaggg
cgcggtcaagctccaggcagaggtggccctcgcggcaattcgcagcgtggaggtgctcaa
cgcgggggtggtgctcagcgtggtagagggcagccagccactaggggtaccgggaatatt
gctcgtacaggaagaggtggaggacggacaacagctgcacaagataagactgtctgggta
caacttgtccaacatcttcgcaaggagaatttgctccctggttgtattttcgtgttctcc
aagaagagatgtgaggagaatgcggattcactctcaaaccaggacttctgtaatgcgtcg
gagaaaagtcttacccacatgtttatcgagaagtcacttacacgcttaaagcccgaagat
aggacgctcccgcagatacttcgccttcgcgacttgctaagcagaggaattgctgttcat
catggaggtcttctgcccattatgaaagagatcgttgaaatcctattcgccaaatcattg
gtcaaggttcttttcgcaacagaaacgttcgctatggggcttaatctaccaactcgtacg
gtggttttctcggggttccgtaaacatgatggtaaaggcttcagggacctgctaccaggt
gaatatacccagatggccggccgtgctgggcgaagaggccttgacactgtcggctatgtc
atcattactagcactggtaaagatgaagcgcctcctgccggtgctttgaagcggatgatc
cttggtgaaccaaccaaacttcgatcccaatttaggcttacttacaatatgattctgaat
ctcttgcgtgttgaggctctgaggattgaagagatgatcaagcgcagttttagtgaaaat
gccacgcaggctttgcttccagagcatgagaaacaagttcaactatcagaagctagtttg
gctaagattaagcgtgagccttgcgatatctgtgacattgatctcgtggcttgtcataat
gcagccatggagtacggaaaactaacaagtgagctgcatgttgggttgctcgcctctccc
gtcggtaagcgtctatttatgcccaagcggctggtcgtttacagaaaggatggatatcgg
actgctggtattatcgtccgagaaggggttggaggagggcctacgcccaccgtacagatt
ctcgaaatcggcaaattaggtggcagacgtcatccaagcgatatcctccccttccttcct
aaattccgacatctattccagactctaccaacccgtggagctgatatgaccttgaaagtt
tgcaagataccactctctgatctggagtgtctcaccaataccatggtgaagctaactggt
cccacgtggtatctcaatatcaagaaagaggccatcaaatttgccgataaagagctgcat
aaatactgtggatcgtggacgagcaccgcttgggacgagatagactggactcgaatcaaa
gaattgcaggtgagggacatactggaaaaacgacaagcccaggcaacaattgccgagtcc
tgcaaatgcttgcaatgcccggacttcttgaaacatttcgagatgcaacacgacgaatgg
caagtcaaagagaacatttcgcagttgaagcaattaatgtccgatcaaaatcttcaactt
ttgccagattacgaacaacgtattcaggtactgaaagaactagggtttgtagatgaacaa
tctcgcgtacagctgaaaggcaaggtagcatgtgagattcactcagctgatgagcttgtc
ttaacggaattggtcctcgagaacgtcttagctgaatacgagcctgaggagattgttgca
cttctatccgcctttgtcttccaggaaaagactgagaatgttcctacattgacaccgcgc
ttggagaagggcaaggaagcgattgttaagatttcggagaaggtgaacgacttccaaatt
caatatcaggtcattcagtctagtgaagatagcaatgactttgccagtcaaccacgattt
ggtctggcggaggtcgtctacgaatgggctaaagggatgtctttcaaccgcatcactgac
ctcaccgatgtgatggaaggtacgattgtacggactataactcgtctggacgaaacatgc
cgagaagtgaagaatgcagcgaagctggttggagacccgtcattatatactaagatgcaa
caggcacaagaactgatcaagagggatgtgatttttgcggcgtcgttgtatatgtag
DBGET
integrated database retrieval system
