Aspergillus oryzae: AO090023000859
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Entry
AO090023000859 CDS
T01018
Name
(RefSeq) unnamed protein product; nuclear exosomal RNA helicase MTR4, DEAD-box superfamily
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aor
Aspergillus oryzae
Pathway
aor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO090023000859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aor03019
]
AO090023000859
03041 Spliceosome [BR:
aor03041
]
AO090023000859
03009 Ribosome biogenesis [BR:
aor03009
]
AO090023000859
03016 Transfer RNA biogenesis [BR:
aor03016
]
AO090023000859
Enzymes [BR:
aor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AO090023000859
Messenger RNA biogenesis [BR:
aor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AO090023000859
Spliceosome [BR:
aor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AO090023000859
Complex C
U4/U6.U5 tri-SnRNP related factors
AO090023000859
Ribosome biogenesis [BR:
aor03009
]
Eukaryotic type
Pre-60S particles
Helicases
AO090023000859
Transfer RNA biogenesis [BR:
aor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AO090023000859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
VasI
AAA_16
Motif
Other DBs
NCBI-GeneID:
5993363
NCBI-ProteinID:
XP_001821361
UniProt:
Q2UGF6
LinkDB
All DBs
Position
3:complement(<2241497..>2245020)
Genome browser
AA seq
1080 aa
AA seq
DB search
MDELFDVFEDQPQAVKPSDGAPKRPKKDKSKKRQVNGDVKESGATVEAKEPVAVVDTPVE
ETSEPEEGDAPTTDNNEQPDAKRPRLEKEPEPVVADLFETAQEREVAGSAGLQAANDSAS
VVLSHQIRHQVAIPPNYPYVPISEHKPPENPARVWPFTLDPFQQVSIASIQREESVLVSA
HTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPT
ATCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVF
LSATIPNAMQFAEWIVKMHNQPCHVVYTDYRPTPLQHYFFPAGADGIHLVVDEKGVFREE
NFQKAMSTIADKKGDDPADAMAKRKGKGKDKKLNKGKNKGPSDIYKIVKMIMIKNYNPVI
VFSFSKRECESGALQMSNLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRR
GIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQR
WVTPSEFIQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMI
LNLMRVEGISPEFMLERCFYQFQNTAGVATLEKELAELEEKRANMTISDEGTIREYYDLR
KQIRQFTDDMQAVISHPNYCLPFIQPGRLISIKHKDVDFGWGVVVNYKQRKAPKNSTEEP
TPYQKYVVDVLLRIADGPSVGTKTFEDLPSGVRPPKEGENSRMEVVPVVLSCLQSISHIR
IFLPKDLHSADSRNGVKKALDEVQKRFPDGIAVLDPIENMNIKDDNFKKLLRKIEVLESR
LLSNPLHNSPRLPELYEQYSDKVETGSKIKATKKKISEAMSIMQLDELKCRKRVLRRFGF
INEAEVVQLKARVACEISTGDELMLSELLFNGFFNNLTPEQVASVLSVFVFEEKSKETPA
LTRDELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVQSFHWELMEVIYEWANGKSFVDI
CKMTDVYEGSLIRVFRRLEECLRQMAQASKVMGSEELESKFETALTKVRRDIVAAQSLYL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacttttcgatgtttttgaggaccagccccaggctgttaagccctctgatgga
gctcccaaacgtcccaagaaagacaagagcaagaagcgtcaggtcaatggggatgtgaag
gaaagcggtgctaccgtagaagcaaaggaacctgtcgccgttgtcgatacccccgttgaa
gagacttccgagccagaggagggcgacgcgcccacgacagacaacaatgaacaaccggat
gcgaaacggccgcgactcgagaaggaaccggaacctgtggtagccgacttgttcgagaca
gcgcaagagcgtgaagtcgccggatctgcaggacttcaagccgccaatgattcggcatcc
gttgtgctatcgcaccaaatccgccatcaggtcgcgatcccgccgaactatccatacgtg
cccatctccgagcataaacctcccgagaacccggcacgagtatggccgttcaccctcgat
ccgttccagcaggtttccatcgcatcaatacaaagagaggagagtgtgctagtttcagcc
cacactagtgccggaaagaccgtcgtcgccgaatatgctattgcccagagcttgaagaac
aaccagagagttatctatacaagtccgatcaaggcccttagcaaccagaaataccgagaa
tttgcagcagagtttggagatgttggtctaatgacgggtgatgttaccatcaatccaacg
gctacttgtctggttatgacaacggagattttgcggtctatgctgtaccgtggctccgag
attatgcgtgaagtcgcctgggttgtcttcgatgaaatccattatatgcgcgatgcgacc
cgaggtgtggtctgggaggaaaccattattctgcttccagataaggttcgctatgtgttc
ttgtctgccacaatccccaatgccatgcaattcgccgaatggatcgtgaagatgcacaat
caaccttgccacgttgtttataccgattacagaccgacacccttacaacattatttcttc
cctgctggtgccgatggaattcacctggttgtagacgagaagggcgtgttccgcgaagaa
aacttccagaaggctatgagtactattgcggacaaaaagggcgatgacccagcggatgct
atggccaagaggaaaggaaaaggcaaagataagaagttgaataaaggtaaaaataagggc
ccaagcgacatctataagattgtcaagatgatcatgatcaaaaactacaaccctgtgatt
gtcttcagtttcagcaagcgtgaatgcgagtcaggtgctctgcagatgagcaacttggcc
tttaatgacgactctgagaaggaaatggtttccaaggtttttaacagtgcgattgaaatg
ctctcggaagaggacaggaacctcccccagattcaaaacattctacctctcttgcgcaga
ggtatcggtgtccaccactctggtctccttcccattttgaaagagaccattgaaattctc
ttccaagaaggtctcatcaaagttcttttcgctactgaaacattctccatcggtcttaac
atgcccgcgaaaaccgttgttttcacaagcgttcgcaaattcgacggtttcagtcagcgc
tgggtcaccccgtcagaatttattcagatgtccggtcgtgctggtcgaagaggtctcgat
gaccgaggtattgttattatgatggttggtgaagagatggatcccgctgtagccaaggag
attgttcgtggtgaacaagaccgactgaattcggcgttccatctgggctacaacatgatt
ctgaacctcatgcgtgtagagggtatctcacctgagttcatgttggaaagatgtttctac
cagttccaaaataccgccggcgttgccactcttgaaaaagagcttgctgagttggaggag
aagagggccaacatgactatttctgacgaaggaaccattcgtgaatactacgatttgagg
aaacagatccgccaattcaccgatgacatgcaggcggttataagccatcccaattactgc
ctacccttcatccagcctggacgcttgatcagcatcaagcacaaggatgtggatttcgga
tggggtgtcgttgtcaactacaagcaacgcaaggccccgaagaattcgaccgaagaacct
acgccgtaccagaaatatgttgttgacgttttgctgaggatcgccgacgggccgtcggtc
ggcactaagacctttgaagatttgccgtccggcgtcaggccgccaaaggagggcgaaaac
tcccgtatggaggtggtgccggtagttctcagctgtctccaatctatctctcacattcga
attttcctcccgaaggatttacattcggcggattcaaggaatggggtgaagaaggctctg
gatgaggtgcaaaaacgcttcccagatggcattgctgtgcttgatccgattgagaacatg
aacatcaaggatgacaacttcaagaagctgcttaggaaaattgaagtgcttgaatctcgt
ctcctctctaacccattgcacaactcgccacgtctgccggaactttatgaacagtactcg
gacaaggttgaaactggatccaagatcaaggccaccaaaaagaagatctccgaggctatg
tcgatcatgcagcttgacgagctaaagtgccgtaaacgagtgcttcgtcggtttggattc
atcaacgaagccgaggtcgtgcagttgaaagcccgtgtggcctgtgaaattagcacgggt
gacgaattgatgctcagcgaattgcttttcaacggtttcttcaataaccttacacctgaa
caagtcgcttcggtgctgagtgtgttcgttttcgaagagaagtccaaggagacccctgcc
ctaacacgggacgagttggcgaagcccctcaaggaaatccaggcgcaagcccgaattgtt
gccaaggtttctcaggagtcaaagctcgctgtcaatgaagaggagtatgtgcagagcttc
cattgggagttgatggaggttatatatgagtgggcgaatggcaagtccttcgttgatatc
tgtaaaatgacggatgtttacgaaggcagtttgatccgagtcttccgccgattggaagaa
tgtttacgacagatggcacaggcctccaaggtcatgggaagcgaggaacttgagagtaaa
tttgagaccgccttaaccaaggtccgcagggacattgttgccgcccagtccttgtatcta
tag
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