Aspergillus oryzae: AO090038000283
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Entry
AO090038000283 CDS
T01018
Name
(RefSeq) unnamed protein product; exoribonuclease R
KO
K18748
protein SSD1
Organism
aor
Aspergillus oryzae
Brite
KEGG Orthology (KO) [BR:
aor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aor03019
]
AO090038000283
Messenger RNA biogenesis [BR:
aor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
AO090038000283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
Rrp44_CSD1
CSD2
DUF5774
Motif
Other DBs
NCBI-GeneID:
5997320
NCBI-ProteinID:
XP_001825225
UniProt:
Q2U2X3
LinkDB
All DBs
Position
6:complement(2914940..2919344)
Genome browser
AA seq
1371 aa
AA seq
DB search
MDQQGQSGVPGPAGRKLHIAHRRSPSELTPLMMEQLAIQQQIELLQQQQQQIAATHQQYV
NMGLLQPQQLGQVSAFSPSLQGGASMGGVSPQINAFQFPQIPQQQLGVPMNSPGQHSHRR
NQSALPGLGLGPPPAPSSGASGYSDYNQPQGNQPKNDNGGHGRGRGGPPGGGHQRRHSLA
LPEAKKAAELAQQKRTASGFQFPAPGAGAESSDNAAGSDDKSTASTTPGPQGLGLHRAGN
IRAGGHGRSQSMAVGSNRGSLSGRGAGGFQFPSSNDSENPRRGSAHARTSSRNFDGNWRQ
PNNQNQGQDQQKSFAQQGSGFQPGHRARASMNQSIGSIGSFQYPGQPQLIQLPQGQVVMA
PPQMFGGGQQLNPLQLAQLQALQQNGQLNGQGLGLQASQHAPPQLSAQQQQQQQQQQRKT
LFTPYLPQANLPALLSNGQLVAGILRVNKKNRSDAYVTSPDLDADIFICGSKDRNRALEG
DYVAVELLDVDEVWSQKREKEEKKKRKDITDARANNNAGTDKLSRSDSGANGDRQEVGPD
GSIRRRGSLRQRPTQKKNDDVEVEGQSLLLVEEDEISDEQKPLFAGHVVAVIERIAGQMF
SGTLGLLRPSSQATKEKQEAERLARDGPHGRSQHERQQDKPKIVWFKPTDKRVPLIAIPT
EQAPRDFVEKHQDYANRIFVACIKRWPITSLHPFGTLVEQLGEMGDLKVETEALLRDNNF
GSDEFSDAVLKSIGWEDWSVASQGEALLASRRDFRQETTFSIVPSGTKELENAYHFRPLG
DGKVEIGIHVTDIAHFVKGNSLVDREAKKRGTAVYLVDRLVNMLPRRISTELCSLLPGED
RLTVSVVLKANPETGAIDDDVWIGKGIIKSAGRLSYEEVDAVVQGASDLSVPEIKADTLR
ALYAVASKFREARFGNRVAHIPPLRLLHQMDDENVPVEYNIFNSSPVRDIVEELSHKADF
FVARKLVAALPEKAFLRRQPSPNVRRLHLFIDRMNRLGFDLDPTSSGTLQSSLCKVQDDD
LRKGMETLFVKAMQRAKYYVASSVQDEQRHHYTLNLPVYTHFTNPSRRYADIIVHRQLEA
ILSNGAIEFSDDIETLNKAADVCNNKKDSAHNAQEQSVQIEACRNMDKKRQEIGGDLISE
GIVLCVYESAFDVLIPEFGFEKRVHCDQLPLKKAEFRKDSRVLELYWEKGVPSSAYIPED
ERPKPANSRAAQAAAAAREAEAARERAREREEAMRKQTETGTISTNDVDALFDDDDDDVS
EVTEMAAGVSLNSSADRSTQSMPPSPTRNGHLQQSPHRTRSDPKIATISGDAPEAKLTNK
EKYLQLFKLREEDGEYIQDVTEMTRVPIILKTDLSKSPPCLTIRSVNPYAL
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaaggtcaatccggagttcccggccccgctggccgcaagcttcatatagct
catcggaggagtccatcagagctaactcccctcatgatggaacaattagcgattcagcaa
cagattgagctacttcaacagcaacaacaacaaatcgctgctactcaccaacagtatgtg
aatatgggactcttacagcctcaacaattgggccaggtttcagcgttctctccttcactc
caagggggtgcgtctatgggcggagtctcccctcagatcaatgccttccaattcccccaa
atcccccagcaacagcttggtgtcccgatgaacagccccggccaacactcgcatcgccgc
aaccagtcagctctccctggcttgggcttgggaccccctccagctccgtcctccggggct
tcaggatattctgactacaatcagccgcagggcaaccagccaaagaacgacaatggtggt
cacggccgtggtcgaggggggcctccgggtggtggccaccagcgacgccactcgcttgca
ctgcctgaagctaagaaggccgcagaactcgctcagcagaagagaacggcgtccgggttc
cagtttcctgcccccggtgctggagctgagtcatccgataatgcagcaggttcggacgat
aagtccaccgcttcgacgacaccgggccctcagggtctcggtcttcaccgggccggcaac
attcgagctggcggtcatggtcggagccaatctatggctgtgggcagcaatcgaggctcg
ctttctggccgcggtgctggtggatttcaattcccatcgtcgaacgactcggagaaccca
cgccgtggaagcgcccatgctcgtacttcatccaggaacttcgatggcaactggcgtcaa
ccaaataaccagaatcagggtcaagatcagcaaaagagttttgcgcaacagggcagtggt
ttccagcccggtcaccgtgcacgtgcatcgatgaatcagtccattggctccattggttcg
ttccagtatcctggacagccacagcttattcagttacctcagggacaggtcgtcatggca
ccgccgcagatgtttggcggcggtcagcagctgaacccgttgcagcttgcacagcttcag
gctcttcagcaaaatggccagcttaacggtcaaggacttggtcttcaggctagccagcac
gcccctcctcagttgtctgctcagcagcagcaacaacagcagcaacaacagcggaagaca
ttgttcaccccttacctacctcaggctaacctacccgctttgttgagcaatggccagctc
gtggccggtattctgcgggtcaacaagaaaaatcgttctgatgcgtatgtcacaagtcct
gatttggatgccgatattttcatctgtggcagcaaagatagaaaccgtgcacttgagggt
gactatgtggccgtggaactcttagatgtggatgaggtctggtcgcagaagagagaaaaa
gaagagaagaagaagcgcaaagacattacagacgctcgggctaacaacaacgctggaact
gataaactctcccgttctgattccggcgcgaatggagaccgccaggaggtcggccctgat
ggcagcattcgccgccgtggcagtctccgtcaacgccccacgcagaagaagaatgatgat
gtcgaagtggagggccagagtctactcttggtcgaggaagacgagatcagcgatgaacag
aagccgctgttcgcgggccatgttgttgctgtgattgaacgaatcgccggacagatgttt
tcgggcactctaggactcctccgtcccagtagccaggcgacgaaggagaaacaagaggct
gaacggctagccagagatggcccccacggccgttcgcagcatgaacgtcagcaggacaag
ccgaagattgtctggtttaagcctacggacaagcgtgttcccctgattgccatccctacg
gaacaggcgccccgtgatttcgtcgagaagcaccaggactacgccaaccgcatctttgtt
gcttgcattaagcggtggcctatcacgtctttgcatcctttcggaacccttgttgagcag
ttgggtgaaatgggcgacctgaaggtagaaaccgaggcgcttctccgtgacaacaacttc
ggatctgatgagttctctgatgctgtcctcaagagcattggctgggaggactggtccgtc
gccagtcagggcgaagctctccttgcctctcgccgggatttccgtcaggaaacgaccttc
agcatcgttcccagtggaaccaaggagcttgagaatgcttaccatttcaggcctcttggg
gacggcaaagtggaaattggaattcatgtcactgacattgctcacttcgtgaaaggcaat
tctctagttgaccgcgaggcaaagaagcgaggcactgctgtctatctcgttgatcgacta
gtcaacatgctgccgcggcgcatctccaccgagctttgctctttgcttcctggagaggac
cgtctcacagtcagtgttgtgctaaaggctaatccggagacgggtgctattgacgacgat
gtttggatcggcaagggcattatcaagagcgccggcaggctgagctacgaggaggtagac
gctgtggttcagggagcttcggatctttctgtgcctgaaataaaggctgacactcttcga
gcactatatgccgttgcctccaaattccgcgaggcgagattcggcaaccgagttgcgcat
atacctcctctgcgacttctccatcagatggatgatgagaacgtccccgttgaatacaat
atcttcaactcctctcctgtgcgggacattgtggaggaattgagtcacaaagcagacttc
ttcgttgctcgtaaattggtggctgctttgcctgaaaaggcattcctccgtcgtcagccg
tcgcccaatgtgcgccgcctccacttgttcatcgatcggatgaacaggcttgggtttgac
ttggaccccacaagcagtggtaccttgcagagcagtctttgcaaggtccaggacgatgat
ttgcggaagggtatggaaacactctttgttaaggctatgcagcgtgccaagtactatgtc
gccagcagcgttcaggacgagcagcgtcatcactacactctcaatctgccagtctacact
catttcaccaacccatctcgccgttatgcggatatcattgttcatcgccaattggaagcg
attctgtctaatggtgccattgagttctctgatgatatcgagaccctgaacaaggctgcg
gacgtttgcaacaataagaaggactctgcgcacaatgctcaggagcaaagtgttcaaatc
gaagcgtgccgtaatatggacaagaagagacaggagatcggcggtgatcttattagtgag
ggcattgtcctttgcgtctatgagtctgcttttgatgtcctcattccggagtttggcttt
gagaagcgtgtccactgtgaccaactacccttgaagaaggccgagttccgcaaagactcc
cgtgtcttggagctctactgggagaagggtgttccgtcctcggcatacattcctgaggat
gaacgtccaaagcccgcgaactcccgtgctgctcaggctgcggcagctgcgcgtgaggca
gaagctgccagagagcgtgctcgtgagagggaggaggctatgcggaagcagactgagact
ggaaccatctccaccaatgacgtggatgccctgttcgatgatgatgacgatgacgtctcc
gaggtcactgagatggctgcaggcgtgtcgttgaactcatctgccgatcgctcgactcag
agcatgccgccttccccaactcgcaatggtcatcttcagcagtcgccccacagaacccgt
tctgatccgaagatcgctacaatcagcggcgatgcccccgaggcgaaattgaccaacaaa
gagaagtacctacagctcttcaagctcagggaagaggacggcgagtatatccaagacgtc
actgagatgacccgggtccccatcatcctgaagaccgatttgtccaagagccctccttgt
cttactatccgctctgtgaacccctacgctctgtag
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