Amycolatopsis orientalis: SD37_09035
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Entry
SD37_09035 CDS
T06703
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aori
Amycolatopsis orientalis
Pathway
aori03030
DNA replication
aori03410
Base excision repair
aori03420
Nucleotide excision repair
aori03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aori00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SD37_09035
03410 Base excision repair
SD37_09035
03420 Nucleotide excision repair
SD37_09035
03430 Mismatch repair
SD37_09035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aori03032
]
SD37_09035
03400 DNA repair and recombination proteins [BR:
aori03400
]
SD37_09035
Enzymes [BR:
aori01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SD37_09035
DNA replication proteins [BR:
aori03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SD37_09035
DNA repair and recombination proteins [BR:
aori03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SD37_09035
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD37_09035
MMR (mismatch excision repair)
DNA ligase
SD37_09035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SD37_09035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANN15783
UniProt:
A0A193BUD2
LinkDB
All DBs
Position
1868655..1870802
Genome browser
AA seq
715 aa
AA seq
DB search
MSSELTPSDLENPEPAQDVTDVPAEVRERHAALAEEIRGHQFRYYVLDSPIVSDGQFDAL
LSELQAIEDEHPGLVTPESPTQNVGGTFSTEFVAHDHLERMLSLDNVFDTGEFETWVERV
QKEIGTTKYLAELKIDGLAINLLYENGRLTRALTRGDGRTGEDVTLNVRTLEQVPERLTG
TDEFPVPALVEVRGEVYFRVEDFLALNAKMVEAGKDPYANPRNTAAGSLRQKDPKITKSR
NLRLICHGLGKRDGFEPKRQSEAYDALAAWGLPVSPHSKVLGSGKELLEHIEYWGEHRHD
AEHEIDGVVIKVDEVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVNVGRTGRVTP
FAVMEPVKVAGSTVSMATLHNQEEVKRKGVLIGDKVVIRKAGDVIPEVLGPVADARTGEE
REFIMPLRCPNCDTELAYQKEGDIDIRCPNSRSCPAQLRERLFHLAGRGAFDIEVLGYEA
AVALLDAGVVHDEGDIFDLDEEKLLQVDLFRTKAGELSANGRKLLDNLETVKDRPLWKVI
VALSIRHVGPTAAQALAREFGSLERIENSSEEELSSVDGVGPTIARAAAEWFAVDWHREI
VEKWRAAGVRMEEERDESIPRNLEGLSIVVTGSLNDYSRDEAKEFIMARGGKAAGSVSKK
TAFVVVGDAPGTKYDKAVQLKVPVLDENGFRVLLESGPEAAAELALPTDEEDSGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaacttaccccctcggatctcgaaaaccccgagcccgcgcaggacgtcacc
gacgtccccgccgaggttcgtgaacgtcatgccgcgctggcggaggagatccgcgggcac
cagttccggtactacgtgctggattcaccgatcgtgtccgatggccagttcgacgcgctg
ctcagcgaactccaggccatcgaggacgagcatccgggactggtgacgccggagtcgccg
acgcagaacgtcggcggcacgttctccaccgagttcgtcgcgcacgaccatcttgagcgc
atgctcagcctggacaacgtcttcgacacgggggagttcgagacctgggtcgagcgggtc
cagaaggagatcggcacgacgaagtacctcgccgagctgaagatcgacgggctcgccatc
aacctgctgtacgagaacggccgcctgacccgcgcgctgacccggggcgacggccgtacc
ggtgaggacgtcacgctcaacgtccgcaccctggagcaggtgcccgagcggctgacgggt
accgacgagttcccggtgcccgcgctggtcgaggtccgcggcgaggtgtacttccgggtc
gaggacttcctggcgctcaacgcgaagatggtcgaggcgggcaaggatccgtacgcgaac
ccgcgcaacaccgccgccggatcgttgcggcagaaggatccgaagatcacgaagtcccgg
aacctgcggctgatctgccacgggctcggcaaacgtgacgggttcgagccgaagcgccag
tccgaggcctacgacgcgctcgccgcttggggactgcccgtctctccgcacagcaaggtg
ctcggttcgggcaaggaactgctggagcacatcgaatactggggcgagcaccgccacgac
gccgagcacgagatcgacggcgtcgtcatcaaggtcgacgaggtcgccctgcagcgccgt
ctcgggacgacctcgcgcgcgccgcgctgggcgatcgcctacaagtacccgccggaagag
gcgatcaccaccctgctggacatccaggtcaacgtcggccgcaccgggcgggtcaccccg
ttcgcggtgatggagccggtgaaggtggccgggtcgacggtgtccatggcgacgctgcac
aaccaggaagaggtcaagcgcaagggcgtgctgatcggggacaaggtcgtgatccgcaag
gcgggcgacgtcatccccgaggtgctcggcccggtggccgacgcgcgcaccggtgaagag
cgcgagttcatcatgccgttgcgctgccccaactgcgacaccgaactggcgtaccagaag
gagggcgacatcgacatccgttgcccgaattcgcggtcctgtcccgcccagttgcgggag
cggctgttccacctggccggccggggcgcgttcgacatcgaggtactcggctacgaggcc
gccgtcgcgctgttggacgccggtgtcgtgcacgacgaaggcgacatcttcgacctggac
gaggaaaagctgctccaggtggacctgttccgcaccaaggcgggcgagctgtcggccaac
gggcgcaaactgctggacaacctggaaacggtgaaggaccgtccactgtggaaggtcatc
gtcgcgctgtcgatccggcatgtcggcccgacggcggcgcaggcgctcgcccgcgaattc
ggctcactggaacggatcgagaactcctcggaggaggaactctccagcgtcgacggtgtc
ggcccgaccatcgcgcgcgccgcggcggaatggttcgccgtcgactggcaccgcgagatc
gtcgagaagtggcgcgcggcgggcgtgcggatggaggaggagcgcgacgagtccatcccg
cgcaacctcgaaggcctgtcgatcgtcgtcaccggttcgctgaacgactactcccgtgac
gaggccaaggagttcatcatggcccgcggcggcaaggcggccggttcggtgtcgaagaag
acggcgttcgtcgtcgtcggcgacgcgccggggacgaagtacgacaaggccgtccagctg
aaggtgccggtgctcgacgagaacggcttccgggtgctgctggagagcggccccgaggcc
gccgccgaactcgcgctgccgaccgacgaggaggacagcggtgagtga
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