Anaeromyxobacter oryzae: AMOR_33470
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Entry
AMOR_33470 CDS
T08524
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aory
Anaeromyxobacter oryzae
Pathway
aory03030
DNA replication
aory03410
Base excision repair
aory03420
Nucleotide excision repair
aory03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMOR_33470 (ligA)
03410 Base excision repair
AMOR_33470 (ligA)
03420 Nucleotide excision repair
AMOR_33470 (ligA)
03430 Mismatch repair
AMOR_33470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aory03032
]
AMOR_33470 (ligA)
03400 DNA repair and recombination proteins [BR:
aory03400
]
AMOR_33470 (ligA)
Enzymes [BR:
aory01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMOR_33470 (ligA)
DNA replication proteins [BR:
aory03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMOR_33470 (ligA)
DNA repair and recombination proteins [BR:
aory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMOR_33470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMOR_33470 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMOR_33470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMOR_33470 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
PGRL1_N
RNA_ligase
BRCT_2
RUBY_RBDX
DUF4796_N
DUF7340
Motif
Other DBs
NCBI-ProteinID:
BDG04351
UniProt:
A0ABM7WY67
LinkDB
All DBs
Position
3854226..3856289
Genome browser
AA seq
687 aa
AA seq
DB search
MPARPPAERARALRDRIREADHAYYVLDRPVLSDAEYDRLMKDLQGLEAEHPELVTPDSP
TQRVGGAPSERFARIRHREPMLSLGNIGTDEELDELDARVHKNLGLPPEEPVRYVVEPKL
DGLAVELVYEDGALAVGSTRGDGTTGEDVTPNLRTIGGLGANRGIPHRLAAGAPRRLEVR
GEVLLQKAHFEAMNRQLLRAGGEPFANPRNAAAGSLRQLDWRITARRPLSFIAYEALVPE
DGRWKTHWQKLQELAALGFETNPENRLCLGIAEVKAYRDRMAEVRFGLPYDTDGIVVKVD
DLDWRRRLGAASKFPRWAAAYKYPPQEEATQVVDIFASVGRTGVLTPVAVVNPVQLSGAT
VTNATLHNEDELRRKDVRIGDWVLMRRAGEVIPEVVKVLPERRTGAEREFRFPEACPVCG
AKVVREEGEKVWRCTGAACPAQLVGRLMHFASRRAMDVEGIGERTAAFLVEQRLVHDVAD
LYDVPFEAWQRAFSRPRKLEPGEKAPELPEKSAQNIVDALARSKDTTLRRLLHALGIPQV
GEATAATLARHFGAVERFMDASEEELLAVRDVGPETAREIRAWTGEPQNRRVVERLLAAG
VHPAPEQVEARGPFAGKTVVLTGTLASMSRDDAKAEIERRGGKVSGSVSRKTDLVVAGED
AGSKLKKATELGVRVVGEEEFARLLRG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccgaccccccgccgagcgtgcccgcgcgctgcgcgaccggatccgcgaggcg
gatcacgcctactacgtcctcgaccgtccggtcctctccgacgccgagtacgaccggctg
atgaaggacctccaggggctcgaggccgagcacccggagctcgtcacccccgactcgccc
acccagcgcgtgggcggtgcaccctcggagcggttcgccaggatccggcaccgcgagccg
atgctctcgctcgggaacatcggcaccgacgaggagctcgacgagctcgacgcgcgcgtc
cacaagaacctcggcctcccgcccgaggagcccgtccgctacgtcgtcgagccgaagctc
gacggcctcgcggtcgagctcgtctacgaggacggcgcgctcgcggtcgggtcgacgcgg
ggcgacggcacgacgggcgaggacgtcaccccgaacctccggaccatcggcggcctcggc
gcgaaccgcgggatcccgcaccgcctcgccgcgggtgcgccgcggcggctcgaggtccgc
ggcgaggtcctgctgcagaaggcgcacttcgaggcgatgaaccgccagctcctccgcgcc
ggcggcgagccgttcgcgaacccgcggaacgccgcggcggggtcgctccggcagctcgac
tggcggatcacggcgcggcgcccgctctccttcatcgcctacgaggcgctcgtccccgag
gacgggcgctggaagacgcactggcagaagctccaggagctcgccgcgctcggcttcgag
acgaacccggagaaccggctctgcctcgggatcgccgaggtgaaggcgtaccgcgaccgg
atggctgaggtccgcttcggcctgccgtacgacaccgacggcatcgtcgtgaaggtggac
gacctcgactggcgccgccgcctcggcgcggcctcgaagttcccgcggtgggccgcggcc
tacaagtacccgccgcaggaggaggcgacccaggtcgtcgacatcttcgcgtcggtgggc
cggacgggcgtgctcacccccgtcgcggtggtgaacccggtgcagctctccggcgcgacg
gtgacgaacgcgacgctgcacaacgaggacgagctccgccgcaaggacgtccggatcggc
gactgggtgctgatgcggcgcgcgggcgaggtgatccccgaggtcgtgaaggtcctcccc
gagcgccggaccggcgcggagcgggagttccggttcccggaggcgtgcccggtctgcggc
gcgaaggtggtgcgcgaggagggggagaaggtgtggcgctgcacgggcgcggcgtgcccc
gcccagctcgtcggccggctcatgcacttcgcgtcgcggcgcgccatggacgtcgagggg
atcggcgagaggaccgcggcgtttctcgtcgagcagcggctcgtgcacgacgtggcggat
ctgtacgacgtgccgttcgaggcgtggcagcgggcgttcagccgcccgcggaagctcgag
ccgggcgagaaggcgccggagctgccggagaagagcgcgcagaacatcgtggacgccctc
gcccgctcgaaggacacgacgctccggcggctgctccacgccctcgggatcccgcaggtc
ggcgaggcgacggcggcgaccctcgcccgccacttcggcgccgtggagcgcttcatggac
gcgagcgaggaggagctgctcgcggtgcgcgacgtgggcccggagaccgcgcgcgagatc
cgcgcctggaccggggagccgcagaaccgccgggtcgtcgagcgcctcctcgcggccggc
gtccaccccgcgccggagcaggtcgaggcccgcgggccgttcgcggggaagacggtcgtg
ctcaccggcacgctcgcctcgatgagccgcgacgacgcgaaggcggagatcgagcggcgc
ggcgggaaggtgtccggctccgtgtcgcggaagacggacctcgtcgtcgccggcgaggac
gcggggtcgaagctcaagaaggcgaccgagctcggggtccgcgtcgtcggcgaggaggag
ttcgcgaggctcctgcgcgggtga
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integrated database retrieval system
