Actinoplanes oblitus: ACTOB_007675
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Entry
ACTOB_007675 CDS
T09687
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aou
Actinoplanes oblitus
Pathway
aou03030
DNA replication
aou03410
Base excision repair
aou03420
Nucleotide excision repair
aou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACTOB_007675 (ligA)
03410 Base excision repair
ACTOB_007675 (ligA)
03420 Nucleotide excision repair
ACTOB_007675 (ligA)
03430 Mismatch repair
ACTOB_007675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aou03032
]
ACTOB_007675 (ligA)
03400 DNA repair and recombination proteins [BR:
aou03400
]
ACTOB_007675 (ligA)
Enzymes [BR:
aou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACTOB_007675 (ligA)
DNA replication proteins [BR:
aou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACTOB_007675 (ligA)
DNA repair and recombination proteins [BR:
aou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACTOB_007675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACTOB_007675 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACTOB_007675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACTOB_007675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WIM95558
LinkDB
All DBs
Position
complement(8656795..8659077)
Genome browser
AA seq
760 aa
AA seq
DB search
MTSPSPEASARHAELADEIRDHQYRYYVLDAPIISDGQFDTLLRELEALETEFPALRMPD
SPTQTVGGTFSSDFASVRHLERMMSLDNVFNVDELNAWAERTVRDAGGPVRFLCELKVDG
LAINLTYEKGKLVRGATRGDGRTGDDVTPNVRTIREIPERLTGDDVPDLLEVRGEIYFPG
EAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRGLRMVVHGIGAREGFGPTSQ
SHAYEALRSWGLPTSTRWRLVDDMAAVREFIDYYGEHRHDVEHEIDGVVVKVDSVAIQGR
LGSTSRAPRWAIAFKYPPEEVTTKLLDIAVNVGRTGRVTPFAVLEPVQVAGSTVAQATLH
NAQEVARKGVLIGDTVVLRKAGDVIPEVLGPVVDLRPADARAFVMPTECPACGTPLAPAK
ESDVDIRCPNSESCPGQLRERLATLGSRTVLDIEVLGEKAAWALLDSGVIKNEGDLFSLT
EEDLLRVPFFVNQDGRLGSNAGKMLQSLQEAKLRPFARVLVALSIRHVGPTAAAALALEY
GSMTALEEVLARTAADPEAVAASAAAAALAEDAGDPSASGDASAAPSDAASPDAAGAVPE
AAGVASGAVVEQAKRKAKAVDPLAAVDGVGPIIADSLREWFTVPWHREIVRKWREAGVRM
ADERAESGPRPLEGLTVVVTGTLAGFTRDQAAEAVTTRGGKVSGSVSKKTGFVVVGDNPG
SKYDKAIALKVSVLDEAAFNVLLTEGPDAARAVAEVAPEG
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcacccagcccagaggccagtgcccggcacgccgagctcgccgacgagatccgt
gatcatcagtatcgttactacgttctcgatgccccgatcatctccgacggccagttcgac
accctgctgcgcgagttggaggcgctggagaccgagttcccggcgctgcgcatgccggac
tcgccgacccagacggtcggtggcacgttctccagcgacttcgcctcggtgcggcacctc
gagcggatgatgtcgctggacaacgtgttcaatgtcgacgagttgaacgcctgggccgag
cgcaccgtccgcgacgccggcggcccggtgcgattcctctgcgagctcaaggtcgacggc
ctcgcgatcaacctgacctatgagaagggcaagctggtccgcggcgccacccgtggcgac
ggccgcaccggcgacgacgtcacgcccaacgtgcgcaccatccgggagatcccggagcgg
ctgaccggcgacgacgtgcccgacctgctcgaggtgcgcggcgagatctactttcccggc
gaggcgttcgccgatctgaacgcgtcgctggtggagcagggcaaggcgccgttcgccaac
ccgcgcaacgccgcggccggcagcctccggcagaaggatccgcgggtcaccgcgtcccgc
ggcctgcgcatggtggtgcacggcatcggcgcgcgggaggggttcggtcccacctcgcag
tcgcacgcctatgaggcgctgcgctcctgggggctgcccaccagcacccggtggcgactg
gtcgacgacatggccgccgtccgcgagttcatcgactactacggcgagcaccggcacgac
gtcgaacacgagatcgacggcgtggtggtcaaggtggactcggtggcgatccagggccgg
ctcggctcgaccagccgggcgccgcgctgggccatcgcgttcaagtatccgcccgaggag
gtcaccaccaagctcctcgacatcgcggtgaacgtggggcgcaccggccgggtgacgccg
ttcgcggtgctcgagccggtgcaggtggccgggtccacggtggcccaggccaccctgcac
aacgcgcaggaggtggcccgcaagggtgtcctgatcggcgacaccgtggtgctgcgcaag
gccggtgacgtgattcccgaggtgctcgggccggtggtcgacctgcgcccggccgacgcg
cgggcgttcgtgatgcccaccgagtgcccggcctgcggcacgccgctggccccggccaag
gagagcgacgtcgacatccgctgccccaactcggagtcctgccccgggcagctgcgcgag
cggctggccaccctgggcagccggaccgtgctggacatcgaggtgctcggcgagaaagcc
gcgtgggcgctgctcgactccggcgtgatcaagaacgagggcgacctgttctcgctgacc
gaggaggacctgctccgcgtcccgttcttcgtcaaccaggacggcaggctgggcagcaac
gccggcaagatgctgcagagcctgcaggaggcgaaactccggccgttcgccagggtgctg
gtcgcgctctcgatccggcacgtcgggccgaccgccgccgcggccctggccctggagtac
gggtcgatgacggcgctggaggaggtgctcgcccggaccgccgcggaccccgaggcggtg
gcggcgagcgcggcggcggcagccctcgccgaggatgccggcgacccgtccgcttccggc
gacgcctcggccgcgccctcggatgccgcttcgccggacgcggccggtgccgttccggag
gccgccggcgtcgcttcgggtgcggtcgtcgagcaggccaagcggaaggccaaggcggtc
gatccgctcgccgccgtggacggggtggggccgatcatcgcggacagcctgcgcgagtgg
ttcaccgtgccgtggcaccgggagatcgtccgcaagtggcgcgaggccggcgtgcggatg
gccgacgagcgggcggagagcgggccgcgcccgctggagggcctgaccgtggtggtcacc
ggcaccctggccggcttcacccgcgaccaggccgccgaggcggtcaccacccgcggcggc
aaggtgagcggctcggtgtcgaagaagaccggtttcgtggtggtcggcgacaaccccggc
agcaagtacgacaaggcgatcgccctcaaggtctcggtgctcgacgaggcggccttcaat
gtcctgctcaccgagggcccggacgccgcccgcgcggtagcggaggtggcaccggaagga
tga
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