Acetobacter oryzoeni: EOV40_004185
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Entry
EOV40_004185 CDS
T06445
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aoy
Acetobacter oryzoeni
Pathway
aoy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aoy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EOV40_004185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoy03021
]
EOV40_004185 (rpoC)
03400 DNA repair and recombination proteins [BR:
aoy03400
]
EOV40_004185 (rpoC)
Enzymes [BR:
aoy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EOV40_004185 (rpoC)
Transcription machinery [BR:
aoy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EOV40_004185 (rpoC)
DNA repair and recombination proteins [BR:
aoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EOV40_004185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
DUF5789
Motif
Other DBs
NCBI-ProteinID:
QEE84968
UniProt:
A0A5B9GFN8
LinkDB
All DBs
Position
874937..879112
Genome browser
AA seq
1391 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIQLASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKVLYFESYLVLEPGTSPLKQYSLLTEEQYLDAMDEYGDEGVEVG
IGAEAIKKVLERIDCDAEKVELRQELKETTSEAKRKKLVKRLKLIEAFAESGSRPEWMIL
DLVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFKVTPDRCEYDETTGALTKE
GAPSFSSIGEVEYALSAGALKLHDKIRARFQKVGADGKVTYETAVTTPGRVLIAQILPQH
EAVPFSLINRQLTKKAVSDVIDTVYRHCGQKEAVIFCDRLMALGFRHAAKAGISFGKDDM
IIPPEKKELVDRTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMTKEISRQ
EVGKQINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYF
TSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIIEEDCGSERGLTVRAVMDGGEVVA
SLSERILGRTVASDVIVPGTGEVIVPRNHLIDEADAERIEKSGVETVHIRSVLTCDSRVG
VCARCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMIEAS
RDGQVVIRNRNVVHNSQNVPIVMARNCEILLSDENGVEKARYRVPYGARLLTEEGAKVAR
GQKLAEWDPYTLPIITEKAGKVEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAGKGVDL
RPRLQLKDANGDVVKLDNGADARYFLSPETLLSVENGTEVNAGDVLARLPREGSKTRDIT
GGLPRVAELFEARRPKDHAIIAEMEGRVEFGKDYKSKRRVIVKNDETGEEQEYLIPKGKH
ISVQEGDFVEKGDPLVDGPRVPHDILKVMGVEALSDYLINEIQDVYRLQGVKINDKHIEV
IVRQMLQKVEILEPGDTTYLIGETVDRIEFEAENAKCLKAGERPAQGMPVLQGITKASLQ
TQSFISAASFQETTRVLTEAATAGKVDKLMGLKENVIVGRLIPAGTGSVMKRLRAIAAEQ
DRQRVGRSAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagctcatgaaaattcttggccagaccggccaggcgatgacgtttgatcagatc
aagattcagctggcatcgcccgaacaaatccgttcctggtcttatggcgaaatcaagaag
cccgagaccatcaactaccgtacattcaagccagaacgggatggcctgttctgtgcacgt
atctttggtccgatcaaggattatgagtgcctgtgcggtaaatacaagcggatgaaattc
cgcggtattatctgcgaaaagtgcggtgttgaagtcacgctggccaaggtgcgtcgtgaa
cgcatgggccatattcagcttgccagcccggttgcccatatctggttcctgaagtctctt
cctagccgtatcggcctgatggttgatatgacgctgaaagatctggaaaaggtgctttac
tttgaaagctacctggttctggaacccggcacgtctccgctgaagcagtactccttgctg
acggaagaacagtaccttgatgccatggatgaatatggcgatgagggtgttgaagtcggt
attggtgcagaagccattaaaaaagttctggaacgcattgactgcgatgccgaaaaggta
gagctgcgccaggaacttaaggaaacaacttcagaagccaagcgcaagaagctggttaag
cgtctgaagctgattgaagcatttgcagaaagcggttcccgcccagaatggatgattctg
gatctggttccggttattccgccggatctgcgtccgctggtgccgctggatggtggtcgc
tttgccacgtctgatctgaacgatctgtatcgtcgcgttatcaaccgtaataaccgtctg
aagcgcctgatggagctgcgtgcgcccgatattatcgtgcgtaacgaaaagcgtatgctt
caggaagctgtggatgcgctgtttgataacgggcgtcgtggccgggctatcacgggtgct
aacaagcgtccgctgaaatccctgtccgatatgcttaaaggtaagcagggtcgtttccgt
cagaacctgctgggtaagcgcgtcgattactccggccgttccgttattgtggtggggcca
gaacttaagctgcaccagtgtggccttcccaagaagatggcgctggaactgttcaagccg
ttcatttacgccaagctggaaaaatacggccacgccaccaccattaaggctgcaaagcgg
atggtggaaaaagagcgtccggaagtttgggatattcttgaagaagttatccgcgaacat
ccggttatgcttaaccgtgcgcctacgctgcaccgtctgggcattcaggcgtttgaaccg
gtgctggttgaaggtaaggctattcagctgcacccgctggtctgcaccgcgtttaacgca
gactttgacggtgaccagatggccgtgcacgtgccgctgagccttgaggcccagcttgaa
gcgcgtgtgctgatgatgtccaccaacaacatcctcagcccggcaaatggtaagccgatt
atcgtgccttctcaggatattgttctggggctgtattacctcagccttgaaacacctgaa
ttcaaggtcacgccggatcgttgcgagtatgacgagacaacaggtgctctgactaaagaa
ggtgcgccgtctttctcttctatcggtgaagtggaatatgcactgagcgccggtgcactg
aagctgcatgataaaattcgtgcacgtttccagaaggtcggtgcagatggtaaggttacc
tacgaaacagctgtgaccacccctggtcgtgtgctgattgcgcagatcctgcctcagcat
gaagctgtgccgttctcccttatcaaccgtcagctcaccaaaaaggctgtgtctgacgtt
attgatacggtgtaccgtcattgtggtcagaaagaagccgttatcttctgtgaccgtctg
atggctctgggtttccgtcacgctgctaaggccggtatttccttcggtaaggatgacatg
atcatcccgcccgaaaagaaagaactggttgatcgtacggctgccgaagtgaaagagttt
gaacagcagtatcaggatggtctgatcacggctggcgaacgctacaacaaggtggtggac
gcatggtcacgttgcacggacgaagtgcaggcggccatgaccaaagaaatttctcgtcag
gaagttggtaagcagatcaactccgtatggatgatgagccactccggggctcgtgggtcg
ccggctcagatgaagcagctggccggtatgcgtggtctgatggccaagccgtctggtgaa
attattgaacagccgattatcgccaactttaaagaaggcctgtcggttctcgattacttc
acctctacccatggtgcacgtaaaggtctggctgataccgcgcttaaaaccgctaactcc
gggtatcttacccgtcgtctggtggacgtggcgcaggacagcatcattattgaagaagat
tgcggcagtgaacgcggtctgacagttcgcgcagttatggacggtggggaagttgtagct
tctctgtccgaacgtattctgggtcgtactgttgcttctgatgtgattgttccgggcacc
ggtgaagttatcgtgccgcgcaatcatctgattgatgaagccgatgcggaacgtattgaa
aagtctggtgtggaaacggttcatatccgctccgtgctgacctgtgatagccgcgttggt
gtttgtgcccgctgctatgggcgtgatcttgcacgcggcacgccggtaaatatcggtgaa
gctgtgggtgttatcgctgctcagtccattggtgagcccggcacacagctgacaatgcgt
accttccatattggtggtgcggcacagcgtggtgcagaacagtccatgatcgaagcttct
cgcgatggtcaggttgtgatccgtaaccgcaacgttgtgcataacagtcagaacgtgccg
atcgtgatggcgcgtaactgtgaaatcctgctgtctgacgaaaacggtgtggaaaaagcc
cgttaccgtgtgccgtatggtgcacgtttgctgacggaagaaggagcaaaggttgcacgt
ggccagaagttggctgagtgggatccgtacacccttccgatcatcacggaaaaagccggt
aaggttgaatacctagacctgattgattccatcacgcttgttgagcgtatggacgaagtg
accggcctgacatccaaagtggtggtggactacaagcaggcaggtaagggggtggatctg
cgcccacgtctgcagcttaaagatgccaacggcgatgtggtgaagctggataacggtgca
gatgcccgttacttcctctctcccgaaacacttctgtctgttgaaaacggcacggaagtg
aatgccggtgacgttctggcccgtctgcctcgtgaagggtccaaaacccgcgatattacg
ggtggtctgccccgcgttgctgaactgtttgaagcacgccggccaaaagaccacgctatt
atcgcggaaatggaaggtcgcgttgagttcgggaaggattacaagtccaaacgccgtgtt
attgtgaagaacgatgaaacgggtgaggaacaggaatacctgatcccgaaaggcaagcac
atttccgttcaggaaggtgactttgtggaaaaaggtgatccgctggtcgatggtccgcgg
gtgccccacgatatcctgaaggtgatgggtgttgaggctctgtccgattatctgattaac
gaaattcaggatgtgtatcgtcttcagggtgtgaagattaacgataagcatattgaagtt
atcgtgcgtcagatgcttcagaaagttgagattctggagccgggtgacacgacatacctg
attggtgaaaccgttgaccgtattgagttcgaggctgaaaatgccaagtgtctcaaggcg
ggtgaacggcctgctcagggtatgccggtgctgcagggtatcaccaaggcctctctgcag
acgcagtccttcatctctgctgcatcgttccaggaaaccacgcgcgtgctcacagaagct
gctacggcagggaaagtggataagctgatgggcctgaaggaaaacgtgattgtcgggcgt
ttgatcccggcagggacgggcagtgtcatgaagcgtctgcgggctattgccgcggagcag
gatcgccagcgtgttgggcgttctgcggccgaataa
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integrated database retrieval system
