Malaciobacter pacificus: APAC_1588
Help
Entry
APAC_1588 CDS
T06712
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apai
Malaciobacter pacificus
Pathway
apai03030
DNA replication
apai03410
Base excision repair
apai03420
Nucleotide excision repair
apai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APAC_1588 (ligA)
03410 Base excision repair
APAC_1588 (ligA)
03420 Nucleotide excision repair
APAC_1588 (ligA)
03430 Mismatch repair
APAC_1588 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apai03032
]
APAC_1588 (ligA)
03400 DNA repair and recombination proteins [BR:
apai03400
]
APAC_1588 (ligA)
Enzymes [BR:
apai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APAC_1588 (ligA)
DNA replication proteins [BR:
apai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APAC_1588 (ligA)
DNA repair and recombination proteins [BR:
apai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APAC_1588 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APAC_1588 (ligA)
MMR (mismatch excision repair)
DNA ligase
APAC_1588 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APAC_1588 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
HHH_5
DNA_ligase_ZBD
BRCT_2
HHH
zf-C4pol
Motif
Other DBs
NCBI-ProteinID:
QEP34688
UniProt:
A0A5C2H8Y9
LinkDB
All DBs
Position
1607405..1609363
Genome browser
AA seq
652 aa
AA seq
DB search
MEKIITSDEYKKQIQTLINWAHAYYVEDNPIATDEEYDKLARTCLAFEQTYPDLSHPNSP
NKRVGGFVLDGFEKASHLSRMWSQEDVFNTQELEDWIKRAQKVNTNLEFYCEPKFDGASL
NLIYENGLLKQAITRGDGSVGEDVTNNVLTIHSIPLEIKEKSLIEIRGEIVIRKKDFEKI
NEERLKNNEALFANPRNAASGSLRQLDPSITAKRKLFFNVWGIGVNTLEHKNMKDKMDYI
YSLGFVKPPLQTLTKTVKEIEEVYHKIIASRDEIPMMLDGMVVKINDIETCEELGYTVKF
PRWSCAYKFPAVEKTTRIKEIILQVGRTGVITPVASVEPTLIDGSTVSRATLHNFDEIER
LDLRINDEVIIIKSGDIIPKITKVFTDRRSGDETPISRPTQCPQCNSELLDEGTMIKCQN
LDCPSIVVNSIIYFASKNCMNIDGLGNKIVELLVKEEKIKDILDLYSLKYEDLENLEGFK
EKKINNLLNAIENTKGTQLHRVINALGIEHIGEVASKQICLEFGLGVIDIDIDSLIALDG
IGEQMANSYVEFMRVNHELVLKLIEIINPEVEEKVEISENVFKGTTVVLTGTMSVSRGVI
KKQLEALGAKVSSSVSKKTDYVIYGEDAGSKYDKAVELGVKTLTEDEMNVMI
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaataataactagtgatgaatataaaaaacagatacagacacttataaattgg
gcacatgcatattatgtagaagataacccaattgcaacagatgaagagtatgacaaatta
gcaagaacttgtttagcttttgaacaaacatatcctgatttatcacatcctaactcacca
aataaaagagttggaggttttgttttagatggctttgaaaaagcatcacatctatcaaga
atgtggtcacaagaagatgtttttaatacacaagaattagaagattggattaaaagagca
caaaaagtaaatacaaatctagagttttattgtgaacctaagtttgatggagcgagctta
aaccttatttacgaaaatggtttattaaaacaagctattacaagaggtgatggaagtgtt
ggagaagatgtaacaaataatgttttaacaatacactctatccctttagaaattaaggaa
aaatctttaatagagattagaggtgagattgttattagaaaaaaagattttgaaaaaatc
aatgaagaaagactaaaaaacaatgaagcactatttgcaaaccctagaaatgcagcttct
ggaagtttaagacaactagatcctagcatcacagctaagagaaaactattttttaatgtt
tggggaattggtgtaaatacacttgaacataaaaatatgaaagataaaatggattatatc
tattcattaggttttgtaaaaccaccacttcaaactttaactaaaaccgttaaagaaata
gaagaagtttatcataaaatcatagcttcaagggatgagattcctatgatgcttgatggt
atggttgtaaagataaatgacattgaaacttgtgaagaattaggttatacagttaagttt
cctagatggtcttgtgcttataaattcccagcagttgaaaaaaccacaagaataaaagag
attatattacaagtaggacgtacaggtgttataacacctgttgctagcgttgagccaaca
cttatagatggaagtacagttagccgtgcaactttacataactttgatgagattgaaaga
cttgatttaagaatcaatgatgaagtaattatcataaaaagtggagatattattcctaaa
atcactaaagtatttactgatagaagaagtggagatgaaacaccaatttcaagaccaact
caatgtccccaatgtaatagtgaacttcttgatgaagggacaatgataaagtgtcaaaac
cttgattgtccttctatagtagttaattcaataatttattttgcaagtaaaaattgtatg
aatattgatggtcttggaaataagattgttgaacttctagttaaagaagagaaaatcaaa
gatatcttagatttatactcattaaaatatgaagatttagaaaaccttgaagggtttaaa
gagaaaaaaatcaataatcttttaaatgcaattgaaaatacaaaaggaacacaacttcat
agggttataaacgctcttggaattgaacatattggtgaagtagcttctaaacaaatctgt
ttagagtttggtttaggtgtaattgatattgatattgattcattaattgcccttgatggg
attggtgaacaaatggctaattcatatgttgaatttatgagagtaaatcatgaattagtt
ttaaaacttattgagataataaatcctgaagttgaagaaaaagttgagattagtgaaaat
gtttttaaaggtacaaccgttgtattaactggtactatgagtgtaagtagaggtgttata
aaaaaacaacttgaagcacttggagcaaaagtaagctcatctgtatcaaaaaagactgat
tatgttatatatggtgaagatgccggaagtaaatatgataaggcagttgaacttggtgtt
aaaactctaacggaagatgaaatgaatgtaatgatttaa
DBGET
integrated database retrieval system
