Alteracholeplasma palmae: BN85401310
Help
Entry
BN85401310 CDS
T03096
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apal
Alteracholeplasma palmae
Pathway
apal03030
DNA replication
apal03410
Base excision repair
apal03420
Nucleotide excision repair
apal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN85401310 (ligA)
03410 Base excision repair
BN85401310 (ligA)
03420 Nucleotide excision repair
BN85401310 (ligA)
03430 Mismatch repair
BN85401310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apal03032
]
BN85401310 (ligA)
03400 DNA repair and recombination proteins [BR:
apal03400
]
BN85401310 (ligA)
Enzymes [BR:
apal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN85401310 (ligA)
DNA replication proteins [BR:
apal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN85401310 (ligA)
DNA repair and recombination proteins [BR:
apal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN85401310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN85401310 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN85401310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN85401310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
ACP_syn_III_C
Zn_Ribbon_TF
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
CCV63708
UniProt:
U4KJU1
LinkDB
All DBs
Position
147673..149652
Genome browser
AA seq
659 aa
AA seq
DB search
MDIKQKINELTEKINQANYQYHTLDNPTISDQQYDAYMKELLSLEERYPEFKQKNSPSEK
IGGFVLDEFKKVEHKVPMMSLSNVFNTDEVSNFYERIRKETQSFTLTTELKIDGLACNLK
YEKGELVLASTRGNGIVGEDITHNVKTIKSVPLKLTEEIDIEVRGEIYLPHANFEKINQE
KIANNETVFANPRNAAAGTIRQLDSKVVAKRGLAMFVYTIVESEKYVSTQYEALKYLEKL
GFKVNPNYAKVETLEELIKQIDTYDVLRKNLAYDTDGVVIKVNELNLYEDIGYTAKSPKW
ATAYKFEAEKIETTVKDIIFQVGRTGVITPVAELEPVIVSGSLVSRATLHNEDYIKDKDI
RKNDYVLIHKAGEIIPEVIEVIKSKRTHQEAFKMIDKCPVCNSTLVRNENEADHFCLNPD
CPGKNLNQLIHFASRVAMDIDTLGEKVLETFHDLSYVSKISDIYDLEKYRLELEDIPGFG
KKKVDKILTAIENSKQQSFDRLIFGLGIKHVGAKVAKLLVSELKNLDDFRNASYEQLINI
PEIGEQIALSVINYFKDPKNLEEIDKLVMHGLNFKAEEKAFISDKFKDKTFVLTGTLEKY
GRTEAASIIESLGGKVSSSVSKKTSYVLAGKEAGSKLEKAQSLGVIVLSEKEFEDLVNE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaacaaaaaataaatgaattaacagaaaaaattaatcaagcaaattatcag
tatcatactttggataatccaacaataagtgatcaacaatatgatgcttatatgaaagag
cttcttagtttagaagaaagatatcctgaattcaaacaaaaaaattctcctagtgaaaaa
ataggaggttttgttttagatgaatttaaaaaagtagagcataaagtccctatgatgtca
ttaagtaatgtttttaatactgatgaagtttccaatttttatgaaagaattagaaaagaa
acacaatcatttactttaactactgaacttaaaattgatggacttgcctgtaatttaaaa
tatgaaaaaggtgagttagtcttagcttctacaagaggtaatggtattgtaggtgaggat
attacacataatgtcaaaacaattaaatcagtacctttaaagttaacagaggaaatagat
atcgaggttagaggggaaatttatttaccacatgctaattttgaaaaaattaatcaggaa
aaaatagctaataatgaaacagtatttgctaatccaagaaatgccgctgctggaacgatt
agacaattagattctaaagtagtagccaaaagaggattagcaatgtttgtttatacaatt
gttgaatctgaaaaatatgtttcaactcaatacgaagctttgaaatatttggaaaagcta
ggatttaaagttaatcccaactatgctaaagtagaaaccttagaagaacttattaagcaa
atagatacatacgatgttttaagaaagaatttagcttatgatactgatggtgttgtgata
aaggtcaatgagcttaacctttatgaagatattggttatactgcaaaatcaccaaaatgg
gcaactgcatataagtttgaagcagaaaaaatagaaacaactgtgaaagacattattttt
caagtaggtagaacaggggtgattacaccggttgctgagttggagccagttattgtttca
ggtagtttagtttctagggcaactcttcataatgaagattatatcaaagataaagacatt
agaaaaaacgattatgttttaatccataaagcaggagaaatcattcctgaagtgattgaa
gtgataaagagtaaaagaacgcatcaagaggcttttaaaatgattgataagtgccctgtt
tgtaattctactttagttagaaatgaaaatgaagcagatcatttttgtttaaacccagac
tgtccaggaaaaaacttaaatcaattaattcactttgcttcaagggttgctatggatata
gatacactaggagaaaaagttttagaaacatttcatgatttaagttatgtaagtaaaata
tcagatatttatgatttagaaaagtatagattagaattagaagatattccaggatttggt
aaaaagaaagttgacaagattttaacggctatagaaaatagtaaacaacaaagttttgat
agacttatttttggattagggattaaacatgttggtgctaaggtagctaaattgcttgtt
tctgaattaaagaatttagatgactttagaaatgcaagttacgaacaattaataaatatt
cctgaaataggtgaacaaattgccttaagtgttatcaattactttaaagatcctaagaat
ttagaagagatagataaattagttatgcacgggcttaattttaaggcagaagaaaaagcc
tttattagtgataagtttaaagataaaacatttgtattaaccggaacactagaaaaatat
ggtagaacagaggccgcttcaattattgaaagtctgggtggaaaagtaagttcatcagtt
tctaaaaaaacaagttatgtactcgcaggaaaagaagcggggtctaaattagaaaaagcc
caaagtctaggagtcatagtcttaagtgaaaaagaattcgaggatttagtaaatgaataa
DBGET
integrated database retrieval system
