Achromobacter pestifer: FOC84_05250
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Entry
FOC84_05250 CDS
T09260
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apes
Achromobacter pestifer
Pathway
apes03030
DNA replication
apes03410
Base excision repair
apes03420
Nucleotide excision repair
apes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOC84_05250 (ligA)
03410 Base excision repair
FOC84_05250 (ligA)
03420 Nucleotide excision repair
FOC84_05250 (ligA)
03430 Mismatch repair
FOC84_05250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apes03032
]
FOC84_05250 (ligA)
03400 DNA repair and recombination proteins [BR:
apes03400
]
FOC84_05250 (ligA)
Enzymes [BR:
apes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOC84_05250 (ligA)
DNA replication proteins [BR:
apes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOC84_05250 (ligA)
DNA repair and recombination proteins [BR:
apes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOC84_05250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOC84_05250 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOC84_05250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOC84_05250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QKH34386
UniProt:
A0A7D4E1Z7
LinkDB
All DBs
Position
complement(1043209..1045317)
Genome browser
AA seq
702 aa
AA seq
DB search
MNGASGGENAAQAAARLRAEIEQHNVRYYVYDDPSVSDAEYDGLMRELQALEAEHPELVT
PESPTQRVGAAPVSAFGSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGLAQEA
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAFPKVLE
VRGEVLMNRADFEKLNQAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VQGLAGSQGGLFAEASAGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRARGAEGLMA
FYAQVGAMRADLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVL
GPVLDKRPDDAREFIMPTACPVCGSAIERLEDETIARCTGGLFCGAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPGL
NRLLYALGIRHVGETTARDVARHFGSIDAIMDADEEALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKSQGVNPVAEAAPQATTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSV
SKKTAYLVAGEDSGSKLAKAQELGVAVLDEDGLKALLGEQGG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgcgtctggcggtgaaaacgcggcgcaagccgcggcgcgcttgcgcgccgaa
atcgaacagcacaacgtccgctactacgtctacgacgacccgtcggtctcggacgccgag
tacgacgggctgatgcgcgaactgcaggccctggaggccgagcacccggaactcgtgacg
ccggagtcgcccacgcagcgcgtgggcgcggcgcccgtgtccgccttcggcagcgtgcgc
cacgtggtgcccatgctgtcgctgggcaatgccttcgacgaagaggacgtggcggccttc
gaccgtcgcgtcaccgacacgctgcgcggcgcgggcctgctggggctggcgcaggaagcc
gattacttctgcgagctgaagctggacgggctggcgatcagcctgcgctacgaggacggc
cgcctggtgcaggccgccacccgtggcgacggccagacgggcgaagacgtcacctccaac
atccgcaccatcaaggcgattccgctgcagctcaagggcgcgtttcccaaggtgctggaa
gtccgcggcgaagtcctgatgaaccgcgccgacttcgagaaactgaaccaggcccaggcc
aagcgcgacgaaaaagtcttcgtcaatccgcgcaatgcggccgcgggcagcctgcgccag
ctggatccgcgcattaccgccaagcggccgttgcgtttcttcgcctatggctggggcgag
gtccagggcctggccggttcgcagggcggtttgttcgccgaagcgtcggccggcgcggcc
gaggcctcgcagctgcccgagaaatcccacggcgccatgctggactggctggcctcgctg
ggcctgcccgtcaacgtcaagcacaaccaccgcgcgcgcggcgccgaggggctgatggcg
ttctacgcccaggtcggggcgatgcgcgccgacttgccctacgacatcgacggcgtggtc
tacaaggtggattcgctgccggcccagaaggtgctgggcttcgtggcgcgcgcgccgcgt
ttcgcgctggcgcacaagttcgccgccgaggaagccaccaccaccttgctcgacatcgag
gtgcaggtgggccgcaccggcgccatcacgccggtcgcgcgcctgaagccggtattcgtg
ggcggcgtcaccgtcaccaacgccacgctgcacaacgaagacgagatccggcgcaaggac
gtgcgcatcggcgatacggtcatcgtgcgccgcgcgggcgatgtgattcccgaagtgctg
ggcccggtgctggataagcggccggacgacgcccgtgaattcatcatgcccacggcctgt
ccggtctgcggctccgccatcgaacgcctggaagacgagaccatcgcgcgctgcaccggc
ggcctgttctgcggcgcgcagcgcaagcagacgttgtggcacgccgccagccgcaaggcg
ctggacatcgaaggcttgggcgaaaagctggtggatcaactggtcgacagcggccgggtc
aagaccttggccgatctgtacagcctgcgtccgctggagctggtgggtctggaccgcatg
ggccagaagtccgccgacaacctggtggccgccatcgacaaggcacgtgcgccggggttg
aaccgcttgctgtacgcgctgggcatccgccatgtgggcgagaccacggcgcgcgacgtg
gcgcgccatttcggcagcatcgacgccatcatggacgccgacgaggaagccctgtcctcc
gtgcccgacgtggggccggtggtggcggcatcgatccgccgcttcttcgccgagcagcac
aaccgcgacgtcatcgagcaactgaagtcgcagggcgtgaaccccgtggccgaggcggcg
ccgcaagccaccacgctggccggcaagaccttcgtgctgaccggcacgctgcccaactgg
acgcgcgaagaagcctcgatgcgcatccaggcggcgggcggcaaggtcagcggctcggtg
tccaagaagacggcctatctggtggccggcgaggattccggcagcaagcttgccaaggcc
caggagctgggcgtggcggtgctggacgaggacgggctgaaggccttgctgggcgagcag
ggcggctga
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integrated database retrieval system
