Aromatoleum petrolei: ToN1_09570
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Entry
ToN1_09570 CDS
T07150
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apet
Aromatoleum petrolei
Pathway
apet03030
DNA replication
apet03410
Base excision repair
apet03420
Nucleotide excision repair
apet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ToN1_09570 (ligA)
03410 Base excision repair
ToN1_09570 (ligA)
03420 Nucleotide excision repair
ToN1_09570 (ligA)
03430 Mismatch repair
ToN1_09570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apet03032
]
ToN1_09570 (ligA)
03400 DNA repair and recombination proteins [BR:
apet03400
]
ToN1_09570 (ligA)
Enzymes [BR:
apet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ToN1_09570 (ligA)
DNA replication proteins [BR:
apet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ToN1_09570 (ligA)
DNA repair and recombination proteins [BR:
apet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ToN1_09570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ToN1_09570 (ligA)
MMR (mismatch excision repair)
DNA ligase
ToN1_09570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ToN1_09570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QTQ35129
LinkDB
All DBs
Position
complement(1026131..1028164)
Genome browser
AA seq
677 aa
AA seq
DB search
MIASAQTFERAAQLRRELEGHNYAYYVLDTPTVPDAEYDRLFRELEALEREFPELATPDS
PTQRVGGAPMPELAPVRHAVPMLSIRTETDTTNGGVIAFDTRVRNALGLGPADAPVEYLG
ELKFDGLAISLRYEQGVLVRAATRGDGETGEDVTHNVRTIRQIPLRLSGKPPALLEVRGE
IYMRRDDFERLNARQEQAGDKLFINPRNTAAGAVRQLDPRIAAKRPLSFYAYGLGETGDW
PLPPTQAQLLDAFAAFGLPVCEHRVVAAGVEGLCGFHDRIAALRDSLPYDIDGVVYKVNR
FELQRELGFVTREPRWAVAHKYPAQEEITELLDIEVQVGRTGALTPVARLKPVFVGGVTV
TNATLHNEGEILRKGVLIGDHVIVRRAGDVIPEVVGSVVERRTGSERPFVMPTRCPVCAS
HVEKAEDEVVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVEAGIVKTPAD
LYKLGVLALANLQRMAEKSAANLLAAIEKSRHTTLARFIFALGIRNVGEATAKDLARHFG
SLDALMDATPESLLAVPDVGPVVAQSIVGFFSEAHNREVIEQLRAAGVKWEEGEPAAPVA
GSASGKVFVLTGTLPTMSRDEAKALIEAHGGKVSGSVSKKTDYVVAGAEAGSKLAKAEEL
GVAILDEDGLRHLLEQG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcttcggcccagacgttcgagcgcgccgcgcagttgcggcgcgaactcgaaggc
cacaattacgcgtactacgtcctcgacacgccgaccgttccggacgcggaatacgatcgc
ctgttccgcgaactcgaagcgcttgagcgcgagtttcccgagctggccacgcccgattcg
ccgacacagcgggtcggcggtgcgccgatgcccgaactcgcacctgtgcggcatgcggtg
ccgatgctgtcgatccgcaccgaaaccgataccacgaacggcggcgtgatcgccttcgac
acccgtgtgcgcaacgcgctgggactcggtcctgccgacgcgccggtggagtacctcggc
gaactgaagttcgacgggctggcgatcagcctgcgctacgaacagggcgtgctggtgcgt
gcagcgacgcgcggcgacggcgagaccggcgaggacgtgacgcacaacgtgcgcacgatc
cgccagattcccctgcgcctgtcgggcaagccgcccgcgctgctggaggtgcgcggcgag
atctacatgcgccgcgacgatttcgaacggttgaatgcgcgtcaggaacaggccggcgac
aagctgttcatcaatccgcgcaataccgcggcaggcgccgtgcgtcagctcgacccgcgc
atcgccgcgaagcgccccttgtccttctacgcttatgggctgggcgagacgggcgactgg
ccgctgccgcccacgcaggcgcagctgctcgatgccttcgcggcgttcggcctgccagtg
tgcgagcaccgcgttgtcgccgcaggcgtcgagggactgtgcggattccacgaccgcatc
gcggccctgcgtgacagcctgccgtacgacatcgacggggtcgtgtacaaggtcaaccgc
ttcgaactgcagcgcgagcttggtttcgtcacgcgcgagccgcgctgggcggtggcgcac
aagtacccggcgcaggaagagatcaccgagctcctcgacatcgaggtgcaggtcggccgc
accggcgcgctgacgccggtcgcgcggctcaagccggtgttcgtcggtggcgtcacggtg
accaatgcgaccttgcacaatgaaggggaaatcctgcgcaagggcgtgctgatcggcgat
cacgtcatcgtacggcgggccggcgacgttataccggaggtcgtcgggtcggtggtcgaa
cggcgtaccggcagcgaacggcctttcgtgatgccgacgcgctgcccggtgtgcgcgtcg
cacgtcgagaaggccgaggacgaggtggtggcacgctgcacgggcgggttgttctgtccc
gcgcagcgcaagcaggccctgctgcatttcgccgggcggcgcgcgatggacatcgagggg
ctgggcgacaagctggtcgaccagcttgtcgaggcgggcatcgtcaagacgccggccgac
ctctacaagctgggcgtgctggcattggcgaacctgcagcgcatggccgagaagtcggcg
gccaacctgcttgcggcgatcgagaagagccggcacacgacgctggcgcgcttcatcttc
gcgctcggcatccgcaatgtcggcgaggcgacggcgaaggatctggcgcggcatttcggc
tcgctcgacgcgctgatggatgcgacgccggagagcctgctggcggtgcccgatgtgggg
ccggtggttgcgcagagcatcgtgggcttcttctccgaggcgcacaaccgcgaggtgatc
gagcagttgcgtgcggcgggcgtgaagtgggaagagggcgagcctgcggctccggtcgcg
ggcagcgcgagcggcaaggtgttcgtgctgaccggcacgctgccgacaatgagccgcgac
gaggccaaggccctgatcgaggcgcacggcggcaaggtcagcggctcggtgtcgaagaag
acggattacgtggtcgcgggagcggaagccggatccaagctcgcgaaggcggaagagctg
ggcgtggcgatcctcgacgaggacggattgcgccacctgctggaacaaggttga
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integrated database retrieval system
