KEGG   Arcanobacterium phocisimile: JTE88_02165
Entry
JTE88_02165       CDS       T07205                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
apho  Arcanobacterium phocisimile
Pathway
apho03030  DNA replication
apho03410  Base excision repair
apho03420  Nucleotide excision repair
apho03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JTE88_02165
   03410 Base excision repair
    JTE88_02165
   03420 Nucleotide excision repair
    JTE88_02165
   03430 Mismatch repair
    JTE88_02165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apho03032]
    JTE88_02165
   03400 DNA repair and recombination proteins [BR:apho03400]
    JTE88_02165
Enzymes [BR:apho01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JTE88_02165
DNA replication proteins [BR:apho03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JTE88_02165
DNA repair and recombination proteins [BR:apho03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JTE88_02165
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JTE88_02165
   MMR (mismatch excision repair)
    DNA ligase
     JTE88_02165
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JTE88_02165
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH_5 BRCT_2 HHH
Other DBs
NCBI-ProteinID: QRV02993
UniProt: A0ABX7IMH1
LinkDB
Position
506187..508718
AA seq 843 aa
MSHVNTQNFEQARSRWNEIAPQLLHAQEVYYSSGDQVMVDAKYDALIRELRDLEESYPQL
WTPQSPTTKVGAKPVHNSLPPITHAQRMYSLQDVFSRDELAQWFTGISAELPKGTLFTTE
VKIDGLALNLTYRNGKLERAATRGDGVTGEDVTRNVRSIASIPHELRGSHLPELVEVRGE
VFFPVAAFNAYNRSVVERNAVIDERNLRISEANKEIAARNREMRKTNQTRDRAHWEPEIP
LKRRESHVKTFVNPRNAASGTMRQEDTSSVALRSLDFIAHGIGEIVSDDGELLNQLSRQA
GVYRAFHEWGLPVSNVTQTHTTLAEINGFLDHYQHARDTLAFEFDGVVIKIDDRAVQERL
GYTTRVPRWAVAFKFPPTEVQTRLVDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHN
PSEVARKGVKIGDIVVVRKAGDIIPEVVGPILAERDGTEVEFVMPEYCPECGAPIAAISD
GDIDLRCTNQRSCPAQLTQRVAHVGSRGALDMEGLGEEAARWLCHPDKNRTDALTALATG
HTLILEDERGRVRRLQLDLNQRLNYGIVDEHGAIMDHEDIIPFELQKELGLPQPQTPVLD
TEAKLFQLRAEDLRDVWIWQEEKSKGKQTGNWKYVRAAWTKPQWSGKGEERAISQPSVPS
KTLQTMLEEIDKAKGKDLWRKLVALNIRHVGPVASQALAQTYTSLDQMRQASLEELSAID
GVGEIIATSFLNWFRQDWHQEIVDQWAGNGVDFTRKEDTTSTRQTLSGLTIVATGSLSNF
TREGIKEAITAAGGKATSSVSKKTSLVVAGENAGSKATKAEELGIPILDEEQFQQLLETG
EMP
NT seq 2532 nt   +upstreamnt  +downstreamnt
ataagccatgtgaatacacaaaacttcgaacaggcgcgttcgcgatggaacgagatagct
ccgcaactcttacatgcacaagaggtttattactcgagtggggatcaggtaatggtggat
gcaaaatacgatgctctcatccgcgaattacgcgatttagaggaatcctatccacaatta
tggactccgcagtccccgacgacgaaggttggagccaagcccgttcacaatagtcttcca
cccattactcatgcacaacgcatgtattccttgcaagatgtgttttcgcgagacgaactc
gctcagtggttcaccgggatatctgcggaattaccaaagggaacgctatttactaccgag
gtaaaaatcgatggactggcactgaacctgacctatcgcaacgggaagctggaacgggca
gcaactcgtggagacggcgtcactggtgaagacgtgacgcgaaacgtgcgctcaatcgca
tcgataccgcacgaacttcgaggctcccatcttccagaacttgttgaagttcgaggtgaa
gtattcttccctgtcgcagcttttaatgcctacaatcgcagtgttgtcgaacgcaatgcg
gtaatcgatgaacgaaacttgcgcatcagcgaagccaacaaagaaattgctgcgcgcaat
cgtgagatgagaaagacgaaccagacgcgtgatcgtgcgcactgggaacccgagattccg
ttgaagcgccgagaaagccacgttaagacattcgtgaatccacgtaacgctgcctccgga
accatgcggcaagaagacactagttccgtagcattgcgttcgctagatttcatagctcac
ggaattggcgagattgtcagcgacgacggcgaactgctcaaccagctttcacgccaagct
ggagtctatcgagctttccatgaatgggggctaccggtttccaacgtgacacaaacacac
actacactggcagaaattaatggcttcctcgatcattatcaacatgcacgcgatacgtta
gctttcgaattcgacggcgtcgtgatcaaaattgatgaccgtgcagttcaagaacgactc
gggtataccacgcgtgttccacggtgggcggtagcgtttaagttcccaccaaccgaagtc
caaacccgactcgttgatattcgagtccaagtgggcagaactggtagggttacaccttat
gcggttatggaaccagtgtttgttgacggatccacagtatcccaagcaaccctccataac
ccttcggaggtggcgcgtaaaggcgtaaaaattggtgatatcgtcgtcgtacgaaaagcc
ggagatatcatcccagaagttgtgggaccgatccttgccgaacgtgacggcactgaagtc
gaattcgtgatgcccgaatattgcccagaatgtggggcgccgattgcggctatcagtgat
ggcgatattgacctgcggtgtaccaatcagcgttcttgcccggcgcaactaactcagcgg
gtcgcgcatgttggttcgcgaggtgctctcgatatggaaggcttgggagaagaggccgct
cgttggttgtgccatccggataaaaatcggaccgatgcgctgaccgctctcgctactgga
cacaccttgattttggaggacgagcggggccgggttcggcggcttcagctggaccttaat
cagcgtctgaactatggaattgtcgatgaacatggcgcgattatggaccacgaagatatt
attccattcgagcttcaaaaggaactgggactgccgcaaccgcaaacacccgtcttagat
actgaagcgaagctattccagttgcgcgccgaagatctacgtgatgtatggatttggcag
gaagaaaaatccaagggcaagcaaaccggcaactggaaatacgtccgtgccgcctggact
aaaccacaatggtcaggaaaaggggaagaacgcgcgatttcccaaccttctgtaccatcg
aaaaccctgcaaacgatgctagaagaaatcgacaaagccaaaggcaaagacctgtggcgc
aaacttgttgcactcaatattcgtcacgtgggtccagtagcgtcgcaggcgctcgcacaa
acctacacctcgctggatcagatgcgtcaagccagcctggaagaactctcagcgatcgac
ggtgttggcgagattatcgctacctctttcctgaactggtttaggcaagattggcatcag
gagattgtggaccagtgggcaggcaacggcgttgacttcactcgcaaggaagataccact
tctacaaggcaaacgttgagcgggctgactattgtagcgactggatcgctgagcaacttt
actcgtgagggtatcaaagaagcaattactgcagcaggaggcaaagcaacaagctcagtg
tcgaaaaagacgagcctcgtcgttgccggagaaaatgctggctcgaaagccaccaaagct
gaagaactgggtattccgatcctggatgaagaacaatttcaacagctactagaaaccggc
gaaatgccgtga

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