Acyrthosiphon pisum (pea aphid): 100163080
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Entry
100163080 CDS
T01076
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100163080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100163080
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100163080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_PARP14_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100163080
NCBI-ProteinID:
XP_003247957
APHIDBASE:
ACYPI004191
UniProt:
A0A8R2NQC0
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Position
A2:63782609..63790991
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AA seq
392 aa
AA seq
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MSVKYVLVSDEEYGEAVELPLEDNGTLLLSTLTAQFPGASGLKFRTENNVVRGVRLADFR
FHVPDNEWGKTPYYCVFPKVENKRKIDDSVENPTAKTKRLETKLKCSDLVVLNIPYTYDE
QKLKEYFGQFGELLMLQIKRDKNGQSRGYGFLRYTNLESQVRVLSQRHKIDGRNCEVKVP
KSKEGNGSELSGKVFVGRVTEDLTADDIREYFSKFGEVINVFVPKNPFRGFAFVTFLDPE
VAASLCGEDHIVKDVSVRVSEAAPKPQAPKNRHQTPPPSEPWERSNNRHNDNYRNWYHSQ
HDNRGSVDMPNLQSLGINGQDSYNPMLPLSPAIVAAALTQAAGWSLANGRMMPPPPPPSG
NNQWSQHGLNSQRNNYNNRKRSNNDYNSSGNR
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcaagtatgtattggtgtctgacgaagaatatggtgaagcggtcgaactgcca
cttgaagacaatggtacattactgctatctacgttaacagcccagtttccgggggctagt
ggtcttaaatttcgcactgaaaacaatgttgtcagaggcgttcggttggctgacttccga
ttccatgtgcctgacaacgaatggggaaagacaccttactactgtgttttccctaaagtg
gaaaataagagaaagattgatgatagtgtagaaaatccaacagctaaaaccaagagatta
gagacaaaattgaaatgttcagacttagttgtcttaaatataccatatacttatgatgaa
caaaaattaaaagaatactttggtcaattcggagaactacttatgttgcagataaaaaga
gataaaaatggacaatctcgaggatatggatttttaagatatactaacttagaatcacaa
gtaagagttctttctcagcgtcacaagattgatggtcgtaattgtgaagttaaggttccc
aagtctaaggaaggtaatggttcagagctttctggaaaagtatttgtgggtcgtgtgaca
gaagatttaacagctgatgacattcgtgagtatttcagcaaatttggagaagtcatcaat
gtgttcgtacccaaaaatccattccgcggatttgcatttgtaactttccttgatcctgaa
gtagctgctagtttatgtggtgaagatcatattgttaaagacgtttcggtgcgtgtttcc
gaagccgccccaaaaccacaagctcccaaaaatcgtcatcaaactcccccacctagtgaa
ccctgggagcgttctaataatcgtcataatgacaattatcgaaattggtatcactcacaa
catgataatcgggggagtgtagacatgcctaatctacagtcattggggattaatggtcaa
gacagctataacccaatgttgcctttgagtccggctattgttgctgctgcattaacgcaa
gctgctggatggagtctagctaatggtcgtatgatgccaccaccaccgcctcctagtgga
aacaatcaatggtctcaacatggtcttaactctcaacgaaataactataataacaggaaa
cgttctaataatgattacaattcttcaggcaatcgctaa
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