Acyrthosiphon pisum (pea aphid): 100168351
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Entry
100168351 CDS
T01076
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100168351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100168351
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100168351
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_PARP14_3
RRM_7
Nup35_RRM_2
WD-like_fungi
Itf52_C
Motif
Other DBs
NCBI-GeneID:
100168351
NCBI-ProteinID:
XP_008180089
APHIDBASE:
ACYPI009059
UniProt:
A0A8R2B3Y4
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Position
A1:43445979..43452898
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AA seq
409 aa
AA seq
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MSFVQVSETNDGDKEVVDLPLEKDGTLLLSTLRAQYPDACGLKYVAPDNGRTRALRLADD
KLHPPTDDGWGDIVYFCSFNKDNGQKRKLNEEFESDVERASKDPKSEATSTAWKNRDLLV
LGLPWKTTDEDLESYFSKYGELRMAQIKKTADGRSRGFGFIRFKEQESQVRSMLDSHVIN
GRRCEIKIPNIKDAFINEAPKKIFVGQLTESITQEDLEDYFKKFGDIVEVFVPRPFKGIA
FVSFTKPDAALTALDQDHTIKDIRLSVSVAMPKDKDQRSRGGRSSGGGGGGGGGGGGGSG
GNPYGGGRMRGSRDSYSSRDHYYDNGGWDDYDRGSSYSDRYRNNSRYDRKPYDSGRSYNS
GQVWRKNEYSDSSSVSQSKDVGGQFDPNLVAAVVEKTVRGVIGNMSKYE
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgtccaagtttccgaaacaaacgacggtgataaagaggtggtggacttgccg
ttggagaaagatggcaccctcttgttgtccacgcttcgtgcacaatatccggacgcttgc
ggcttaaagtacgtagctccggacaatggccgaactcgagctctacggcttgccgatgat
aagctacatccacctactgacgatgggtggggcgacattgtatacttttgttcattcaac
aaggataatggacagaaaaggaaattgaacgaagaatttgaaagtgatgttgagcgagca
tccaaggatcccaagtctgaggcaacatcaacagcttggaagaatcgtgatttacttgtg
ctcggtttaccatggaaaacgactgatgaggacttagaaagttactttagtaaatacggt
gaactgcgcatggcacaaattaaaaagacagctgatggtagatcaagaggttttggattc
atacgatttaaagaacaagaatctcaagtgcggtcaatgttagattctcatgtgataaat
ggaaggcgatgtgagattaaaataccaaacattaaggatgcatttataaatgaagcgccg
aagaaaatatttgtgggacaactgaccgaaagtataactcaagaagatctagaagactat
tttaaaaaatttggagatattgttgaagtgtttgttcctcgtccatttaaagggattgcc
tttgtatcattcaccaaaccagatgctgcactcactgctcttgaccaggatcataccatc
aaagatattcgtctcagtgtgtctgttgctatgcccaaagataaagaccaaagatcacgt
ggtggacgcagtagtggaggcggaggtggtggtggtggtggcggtggcggcggaagtggt
ggaaatccatatggcggtggtcgtatgagaggaagtcgagattcctacagtagtcgtgat
cactattatgataatggtggttgggatgattatgaccggggcagtagttattcagatcgt
tatagaaataatagtcgttatgatagaaagccatacgatagtggcagatcttacaattct
gggcaggtatggagaaaaaatgaatattctgattcatcgtctgtatcccaatctaaagat
gttggtggccagtttgatccaaatttagtggctgcagtagtagaaaagacagtgagagga
gtgattggaaatatgagcaaatatgaataa
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