Apibacter sp. B2966: G8C43_05050
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Entry
G8C43_05050 CDS
T06471
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apib
Apibacter sp. B2966
Pathway
apib03030
DNA replication
apib03410
Base excision repair
apib03420
Nucleotide excision repair
apib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G8C43_05050 (ligA)
03410 Base excision repair
G8C43_05050 (ligA)
03420 Nucleotide excision repair
G8C43_05050 (ligA)
03430 Mismatch repair
G8C43_05050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apib03032
]
G8C43_05050 (ligA)
03400 DNA repair and recombination proteins [BR:
apib03400
]
G8C43_05050 (ligA)
Enzymes [BR:
apib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G8C43_05050 (ligA)
DNA replication proteins [BR:
apib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G8C43_05050 (ligA)
DNA repair and recombination proteins [BR:
apib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G8C43_05050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G8C43_05050 (ligA)
MMR (mismatch excision repair)
DNA ligase
G8C43_05050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G8C43_05050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
Auto_anti-p27
RNA_lig_T4_1
KorB
zf-tcix
zf-NADH-PPase
HCR
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QII72168
LinkDB
All DBs
Position
complement(1169152..1171155)
Genome browser
AA seq
667 aa
AA seq
DB search
MSNTKDRIEFLRKELTDLNYKYYVLDQSDVSDYEFDQMMNELKQLEKENPELDSPGSPTH
RVGGQITKIFPTVRHERRMYSLDNSYSFDDIKDWATRVAKSIDEKVEYVCELKYDGLSIS
ILYENGQLVQAVTRGDGFQGDDVTHNVRTIRSVPLHLRGKYPQRFYIRGEIIMPKKSLDK
LNEERKKEGLEPYANPRNTASGSLKLQDSEAVAKRGLDCYLYYVLTDERGYSTQWDSLQH
AKDMGFKVGNYARLCTNLEEVTAFIEHWNTERYHLPFEIDGVVIKVNSISEQEELGYTAK
SPRWAIAYKFKAEKVETQLLSVDYQVGRTGAITPVANLKPVLVAGTTVKRASLHNQDFIA
NMDLRINDMVFVEKGGEIIPKIVDVNYDKREPGTIKLEFIKNCPACGTPLVREPGEAAHF
CPNEKSCPPQVMGRMEHFVSRKAMNIDSVGAETVSMLYENGLIKDISDFYTLKKEQLIGL
DRMADKSAQNIIDGIENSKQIPFEKVLYALGIRHIGETMAKKLAKRFKSIEGLQNATLEE
LENTADVGNKIAISIQEYFAKPEHLALIDRLKKAGLHFETEDSQEEISHILEGKTFLFTG
KLTAFTREHAEELVEKNGGKNISSVSKNLDYLVVGEKAGSKLKKAEQLGTVHILDEYQFL
DLFEKKA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatactaaagacagaattgaatttttaaggaaggaactaacggatttaaattac
aaatactatgtattagatcaatctgatgtttcggattatgagtttgatcagatgatgaat
gagctgaagcaattagaaaaagaaaatccggaattagacagtcccggttcacctacccat
agagtaggagggcaaataactaagatttttcctaccgtaagacatgaaagaaggatgtat
tcactcgataatagttactcatttgacgatatcaaagattgggcaacaagagtagccaaa
tctatagatgaaaaagtagaatatgtatgtgaattaaaatacgacggattatccatcagt
atattatatgaaaacggacagctagttcaagcagttacccgaggtgacggctttcaaggg
gatgatgttacccataatgtgagaactatacgatctgttccgcttcatctcagaggtaaa
tatccgcaacgtttttatataagaggagagattatcatgcccaaaaaatctttggataaa
ctcaatgaagaaagaaaaaaagaaggattagaaccctatgccaatccaagaaatacggct
agtggaagtttaaagcttcaggatagcgaggcggtagcaaaaaggggccttgattgctat
ttatattatgtacttactgatgaaagaggatacagtacccaatgggattctttgcaacat
gctaaagacatgggatttaaagtaggaaattatgcccgattgtgtaccaatctagaagag
gtaacggcatttattgaacattggaatacggaaagatatcatcttccctttgagattgac
ggagtcgtaataaaagtaaattccatttcagaacaagaagaactaggttatacggctaaa
tctcctcgatgggccattgcttataaattcaaggccgaaaaagtagaaacacaattatta
agtgttgactatcaagtaggaagaacgggagcaataactccggtagccaatttgaaaccg
gtgttagttgcaggaaccacagtaaaaagagcctctcttcacaatcaagattttatcgct
aatatggatttacgaatcaatgatatggtttttgtagaaaaaggaggagaaattatcccc
aagattgtggatgtgaattatgataaaagagaaccgggcacgattaagctggaatttatt
aagaattgtccggcttgtggtacacctttagttcgggaaccgggagaagctgctcatttt
tgtcctaatgaaaagtcttgtccgccacaagtgatgggaagaatggaacattttgtttcc
agaaaggccatgaacatagacagcgtaggagcagagacggtttcaatgctttatgaaaat
ggattgatcaaagatatctcggatttctataccttaaaaaaagaacaattaatcggactt
gatagaatggctgataaatcggctcaaaatataattgacggtatcgaaaattcaaaacaa
atcccttttgagaaggttttatatgcgttgggaattcgtcatataggagaaaccatggct
aagaaactggctaaaagatttaaatcaattgaggggttacaaaatgcaacgttagaagaa
ctggaaaatacggctgatgtaggaaataaaatagccataagcatacaagaatattttgcc
aaacccgaacatttggcactcattgacagattaaaaaaagcaggtttacatttcgaaaca
gaagattctcaggaagaaatctcccatattttagaaggaaaaacttttttatttacaggg
aaattaaccgctttcacaagagaacatgccgaagaattggtagaaaaaaatggaggaaaa
aatatttcatccgtgagtaaaaatttagattatttggtagtaggagaaaaagccggatcg
aaacttaaaaaggctgaacaattgggaacagtacatatattagatgaatatcaatttcta
gacttatttgaaaagaaggcataa
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