Candidatus Annandia pinicola: GFK87_00106
Help
Entry
GFK87_00106 CDS
T07601
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apin
Candidatus Annandia pinicola
Pathway
apin03030
DNA replication
apin03410
Base excision repair
apin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFK87_00106 (ligA)
03410 Base excision repair
GFK87_00106 (ligA)
03420 Nucleotide excision repair
GFK87_00106 (ligA)
03430 Mismatch repair
GFK87_00106 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apin03032
]
GFK87_00106 (ligA)
03400 DNA repair and recombination proteins [BR:
apin03400
]
GFK87_00106 (ligA)
Enzymes [BR:
apin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GFK87_00106 (ligA)
DNA replication proteins [BR:
apin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFK87_00106 (ligA)
DNA repair and recombination proteins [BR:
apin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GFK87_00106 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFK87_00106 (ligA)
MMR (mismatch excision repair)
DNA ligase
GFK87_00106 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GFK87_00106 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
Histone_H2A_C
SOAR
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UDG80335
LinkDB
All DBs
Position
108906..110642
Genome browser
AA seq
578 aa
AA seq
DB search
MNYIKSSVLKIKKKIIYYDYLYRNLSYSEIPDYEYDKLLNKFNILKKKCTIIKNNIFNKI
KFKYSNILNFKKKTHLLPMLSLKNTFNIEEIYNFYKKIFKNLKKKFYLCCELKIDGISIS
LIYKKGNLIQAITRGNGYLGDDIIANVLTIKNIPLILKGNNIPEKINICGEIFITYKNLK
NIKKKNNSFFSNSRNIVSGTLKNINSKITSNRNLTFLCYNVNFSKQKLFNESHFECLKKV
NKWGIPIHNYIKKTYKIKEIKKFFFYANINRKYFGFDNDGIVIKIDSKKIQNKIGCNNKY
PKWAIAYKFKSQEKITKVINIVFNISRYGILIPIAYIKPINILGSKISKITLHNKKNIEM
LNLYIGDSVIVKYSGDVIPQIIKVILSKRTKEAKKIIFPTLCPICNSKLKYIKNKYLYKC
NSNLNCRIQLQEKIINFISKNGFNITVIKRNIVFELIKKKYIKNISDIFKLNYKILSRLN
TINKSLLYNILISINKSKNIHLSNFIYSLGIENVGKIISLNIANYFKYISKIIYADIKEI
NSVPKISKKISLNVFNFMKKKKNKIIISKILKHVKIFI
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaattatattaaaagcagtgtcttaaaaataaaaaaaaaaataatatattatgattat
ttatatagaaatttaagttattctgaaatacctgattatgaatatgataaattattaaat
aaatttaatattttaaaaaaaaaatgtactataattaaaaataatatatttaataaaatt
aaatttaaatattcaaatatattaaattttaaaaaaaaaactcatttattaccaatgtta
tcattaaaaaatacttttaacattgaagaaatatataatttttataaaaaaatatttaaa
aatttaaaaaaaaagttttatttatgttgtgaactaaaaatagatggaatatcaattagt
ttaatttataaaaaaggaaatttaatacaagcaattactagaggtaatggttatttagga
gatgatataatagctaacgtattaactataaaaaatattccattaattttaaaaggtaat
aatattccagaaaaaataaatatttgtggtgaaatatttataacctataaaaatcttaaa
aatattaaaaaaaaaaataatagttttttttctaattctagaaatatagtatcaggtaca
ttaaaaaatattaattctaaaattacatcaaatagaaatttaacatttttgtgttataat
gttaatttttcaaaacaaaaattatttaatgaaagtcattttgaatgtttaaaaaaagtt
aataagtggggtattccaatacataattatataaaaaaaacatataaaataaaagaaatt
aaaaaattttttttttatgcaaatattaatagaaaatattttggattcgataatgatggt
atagtaataaaaatagattctaaaaaaatacaaaataaaattggttgtaacaataaatat
ccaaaatgggctattgcttataaatttaagtctcaagaaaaaattactaaagtaattaat
atagtttttaatataagtagatatggtattttaatacctatagcatatattaaaccaatt
aatattttaggaagtaaaattagtaaaattactttacataataaaaaaaatatagaaatg
ttaaatttatatataggggatagtgttatagtaaaatattcaggagatgttatacctcaa
attataaaagtaatattatctaaaagaactaaagaagcaaaaaaaattatttttccaaca
ttatgtcctatttgtaattctaaattaaaatatataaaaaataaatatttatataaatgt
aattcaaatttaaattgtagaatacaactacaagaaaaaataataaattttatttctaaa
aatggatttaatataactgttattaaaagaaatatagtttttgagttaataaaaaaaaaa
tatattaaaaatatatcagatatatttaaattaaattataaaattttatctagattaaat
actatcaataaatctttattatacaatattttaatttctattaataaatctaaaaatata
catctatcaaattttatatattctttaggaattgaaaatgtgggtaaaataatatcatta
aatattgctaattactttaaatatataagtaaaataatatatgcagatataaaagaaata
aattcagttcctaaaatatcaaaaaaaatatcattaaatgtatttaattttatgaaaaaa
aaaaaaaataaaataataatttcaaaaatattaaaacatgttaaaatatttatataa
DBGET
integrated database retrieval system
