Acetobacter pasteurianus 386B: APA386B_813
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Entry
APA386B_813 CDS
T02786
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apk
Acetobacter pasteurianus 386B
Pathway
apk03030
DNA replication
apk03410
Base excision repair
apk03420
Nucleotide excision repair
apk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APA386B_813 (ligA)
03410 Base excision repair
APA386B_813 (ligA)
03420 Nucleotide excision repair
APA386B_813 (ligA)
03430 Mismatch repair
APA386B_813 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apk03032
]
APA386B_813 (ligA)
03400 DNA repair and recombination proteins [BR:
apk03400
]
APA386B_813 (ligA)
Enzymes [BR:
apk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APA386B_813 (ligA)
DNA replication proteins [BR:
apk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APA386B_813 (ligA)
DNA repair and recombination proteins [BR:
apk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APA386B_813 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APA386B_813 (ligA)
MMR (mismatch excision repair)
DNA ligase
APA386B_813 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APA386B_813 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
PTCB-BRCT
HHH_5
RUBY_RBDX
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
CCT58921
LinkDB
All DBs
Position
840666..842798
Genome browser
AA seq
710 aa
AA seq
DB search
MPPAPLPPACLDMRIMPETALLPADMTQQQAREELERLAAEIAHHNAAYYRNDAPEISDA
EYDALRRRYDAIVAQHPEAEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEG
FISRATRFLGLDQDATEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANL
RTLKDLPLRLSGSYPDLIEIRGEVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQL
DPKITSQRPLSLFAYALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFA
EVSQSRAELAYDIDGVVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQV
GRTGALTPVAHLEPVNVGGVLVMRATLHNEDEIARKDVRPGDMVFIQRAGDVIPQVLGVA
PSPDGTPRQAPYHFPDHCPVCGAAAVRPEGEAVRRCTGGLTCPAQVVERLIHFVSRQAFD
IEGLGDRSIREFHDIGLILTPGDIFRLHEHAADIEKRDGWGEQSVQKLLQAIESRRTISL
SRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTTTAE
DLVAFVAEEHNLQTLADLHANLTITEETAASEGALAGKTIVFTGTLHTMTRPEAKATAER
MGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEWNAFCSEQE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgcgccgctgccgccagcctgcttggatatgagaataatgcctgaaactgcc
cttcttcccgccgacatgacacaacaacaagcgcgggaagaactggaacgccttgccgcc
gaaattgcccaccacaatgcggcctattatcggaacgatgctccagaaatcagtgatgca
gaatatgatgccctgcgccggcggtatgatgccattgtggcccagcacccagaggccgaa
ccagaaaacagcgcagcccaagccgtaggtgccgcaccggatacagcttttggcaagcat
atccaccttgtgcccatgctctctctcgacaacgtgtttgaccgggaagattttgaagga
tttatcagccgcgccacccgctttttggggctggaccaggatgcaaccgaacaactgatt
tttgtaggggaacccaagattgatggactttccatcagcctgacctacgaaaaaggccgt
tttgtacgaggcaccacccgcggagatggcacagaaggggaagacgttaccgccaatttg
cgcacgctaaaggatttgccattacgtctttccggttcctaccctgatctgatcgaaatt
cgtggtgaggttttcctttccaaaaaacactttctggaactcaacgccgcgcaggaagct
gcaaacaagcggttgtttgccaacccacgcaacgcagcagcagggtccctacggcagttg
gaccccaaaattacgtcgcaacgcccgctttctttgtttgcttacgcgcttggcttttgc
tcagaaaaaatcagccgcagccattgggcatatctggaacaactcaaagcatggggtttc
ccggttaatccgctttcccgccagattaaaggcgtggaagatgccgaggctttttttgct
gaggtcagccaaagcagggctgaacttgcctacgatattgatggcgtcgtttacaaaatt
gatgatctggctctgcaggaacgcttggggtttgctggccgtgcgccccgctgggccatt
gcgtggaagtttccggcagaacaggcaattacacgcctgaaggaaatagaaattcaggtt
ggccgcacaggtgctctcaccccagttgcgcatttagaacccgtaaatgttggcggcgtg
ctggttatgcgcgcaaccttgcataacgaagatgaaattgcccgcaaggatgtccgcccc
ggtgatatggttttcatccagcgtgcgggggatgttatcccccaagttttgggtgttgcc
ccttccccagatggcacgccccggcaggcaccttaccacttccctgatcattgccctgtt
tgtggggctgctgctgtacggccagaaggggaagctgtgcgccgttgcacgggtgggctc
acctgtccagctcaggttgtagaacggcttatccactttgtttcccgccaagcgtttgac
attgaaggcttgggagaccgcagcattcgtgaattccatgatatcggcctgattttaacg
cccggtgacattttccgcctgcatgaacacgccgcagacatagaaaagcgcgatggatgg
ggcgaacaatcggttcaaaagctgctgcaagctatagagagccgccgcaccatttctctt
tctcgctttatttatgcgctgggtatccgccggattggtgccagcaatgcccgcctgctg
gcgcgccactatggcacgtatgaaaactggttcagccagatgcaggctgccgccattatc
ggatctgatgcccggctggaactcggctccattaccggcataggcaccaccacggcggaa
gatctggtagcctttgttgcagaagaacataacctgcaaacattggcggatttgcacgca
aacttaaccataacggaagaaaccgcggcatccgaaggcgcattggctggcaaaaccatt
gtgtttaccggcaccctacacaccatgacacggccagaagccaaagcaacggcagaacgc
atgggcgccaaggtttcggattctgtttccaaaaaaacagacctggttgttctgggagaa
aaagcaggctcaaaagccaaaaaggccgttgagcttggacttcagaccatggatgaggct
gaatggaacgctttttgctccgagcaggaataa
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