Actinobacillus pleuropneumoniae L20 (serotype 5b): APL_1302
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Entry
APL_1302 CDS
T00476
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apl
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Pathway
apl03030
DNA replication
apl03410
Base excision repair
apl03420
Nucleotide excision repair
apl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APL_1302 (ligA)
03410 Base excision repair
APL_1302 (ligA)
03420 Nucleotide excision repair
APL_1302 (ligA)
03430 Mismatch repair
APL_1302 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apl03032
]
APL_1302 (ligA)
03400 DNA repair and recombination proteins [BR:
apl03400
]
APL_1302 (ligA)
Enzymes [BR:
apl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APL_1302 (ligA)
DNA replication proteins [BR:
apl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APL_1302 (ligA)
DNA repair and recombination proteins [BR:
apl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APL_1302 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APL_1302 (ligA)
MMR (mismatch excision repair)
DNA ligase
APL_1302 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APL_1302 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABN74388
UniProt:
A3N1V2
LinkDB
All DBs
Position
complement(1492112..1494163)
Genome browser
AA seq
683 aa
AA seq
DB search
MPLLSQMQEYQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQH
PEWITVDSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPHTL
AFCCEPKLDGLAVSILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARL
EVRGEVFMPQKGFEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIG
VYESDDELPATHFERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGT
VLKVNDIGLQEQLGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVF
VAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTA
CPVCESAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMEREL
VHTPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQN
LANHFHNLAAIRTATFEQLQAVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQDVI
QVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKL
AKAQELGVKILTEQEFIALTGEN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcctttattatcacaaatgcaagaataccaagcggacacgactttcgcacaattagaa
gctttacgtcaaaaattacgagaatatgaataccattatcacgtattggataatccgtta
gtgccggatgcggaatatgaccgcttaatgaatgaattaaaaaatctggaatggcaacat
ccggaatggattaccgtcgattctccgacccaacgtgtcggggcgaaaccgctggacggc
tttgcacaagtgacgcacgaaattccgatgttatcgttggataatgccttttccgatgaa
gaattagacggttttttacgccgtatggaaagttatattactgaagatccgcatacgctt
gctttttgttgcgaacctaaattagacggtttagcggtcagtattttgtatgtggatgga
gtgttaagccaagcggcaacccgtggtgacggtagcaccggcgaggatattacctcgaat
attcgtaccattcgtaatatcccgttaaaactgaatatggataatccgccggcacgctta
gaagtgcgtggcgaggtgtttatgccgcaaaagggcttcgaagaattgaatgaacgtgcg
ttggaaaaaggtgagaaaacctttgctaacccacgtaatgcggcggcaggctcattacgt
cagttagatccgaaaatcactcgtcagcgtccgcttgtgttaaatgcctatggaatcggt
gtttatgaatcggatgatgaattacctgcaacccattttgaacgtttgcaatggctgaaa
tctatcggtattccggttaataatgaaattcgcttggcaacagggcgtgagcaattactt
gcgttctatgcgaatattcaagccaagcgtccgacactcggttatgacattgacggcacg
gtgctaaaagtgaatgacatcggcttacaagagcagctcggctttatttctcgttcgccg
cgttgggcgattgcttataagtttccgtcacaagaagaaatgacggtgttgaatgatgtg
gaatttcaggtgggcagaaccggggcaattaccccagtcgcaaaattagaaccggtattc
gttgccggtgtgacggtgagtaatgccactttacataacggtgatgaaattgagcgttta
ggcattgtcatcggcgatacggtgattattcgccgtgccggtgatgtgattccgcaaatt
gtcggggtggtgatggatcgccgtccggaaaatgcaaaaaaaatcgaatttccgactgct
tgtccggtatgtgaatcggcggtagtacgtgtggaaggcgaagcggttgctcgctgtacc
ggcggtttattctgtggtgcacagcgtaaagaagcgttgaagcatttcgtttcccgtaaa
gcaatggatattgacggggtcggcgaaaaattgattgagcaattaatggaacgtgagctg
gtgcatactcctgcggatctgtttaaactcgatcacacaactttaatgcgtttggaacga
atgggcgaaaaatcggcacaaaatgcgttaaacagcatcgaaaaagcaaaaaataccact
ttggcacgtttcctatttgcattaggtattcgtgatgtcggtgaagctaccgcacaaaac
ttagcgaaccatttccataatttggcagcgattcgtacggcaactttcgagcaattacaa
gcggtacaggatgtcggtgaagtggtggcaaatcgtattgtacgtttctggcaagaacct
cataatgttgcggttgtcgaagatttgatttcacaaggcgtacattggcaagatgtgatt
caggttgaaattgcggataacccgttaaaaggtaaaaatgtggttttaaccggtacactt
actcaattaacccgagatcaagcaaaagcattgctacagagtttcggttgtaaagtatcc
ggctcggtttcaagcaaaaccgattatttgattgccggtgaaaaagccggttcaaaattg
gcaaaagcgcaagaacttggcgttaagatattgaccgaacaagaatttatcgctttaacc
ggcgaaaattaa
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integrated database retrieval system
