Arthrobacter polaris: J0916_02965
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Entry
J0916_02965 CDS
T08694
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apoa
Arthrobacter polaris
Pathway
apoa03030
DNA replication
apoa03410
Base excision repair
apoa03420
Nucleotide excision repair
apoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J0916_02965 (ligA)
03410 Base excision repair
J0916_02965 (ligA)
03420 Nucleotide excision repair
J0916_02965 (ligA)
03430 Mismatch repair
J0916_02965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apoa03032
]
J0916_02965 (ligA)
03400 DNA repair and recombination proteins [BR:
apoa03400
]
J0916_02965 (ligA)
Enzymes [BR:
apoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J0916_02965 (ligA)
DNA replication proteins [BR:
apoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J0916_02965 (ligA)
DNA repair and recombination proteins [BR:
apoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J0916_02965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J0916_02965 (ligA)
MMR (mismatch excision repair)
DNA ligase
J0916_02965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J0916_02965 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
UIK89432
LinkDB
All DBs
Position
745288..747582
Genome browser
AA seq
764 aa
AA seq
DB search
MRLDGTVTSPQETPDSTPSATFLPTAAERDRYAELVDLIXKYRAAYYNDDAPIVSDAEFD
LLYSELETLEALQPELVTGDSPTQSVGGDVSVAFTAVDHLARMYSLEDVFSLAELEAWLN
RAAASVDKRGGQAPQWLTELKIDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKD
IPQRLHGANFPAEVEIRGEVFIASKDFITLNEQMVAAGKAPFANPRNSAAGSLRQKDPAE
TAKRPLSMFVHGIGAREGLTTATQSETYELLKSWGMPISPYYKVLDTLPEVMAFIAYYGE
HRHDVIHEIDGIVVKVDDLGTQRELGHTSRVPRWSVAYKXPPEEVNTKLLDIKVNVGRTG
RVTPYGIMEPVKVAGSVVTMATLHNQDVVKAKGIMIGDIVVLRKAGDVIPEIVGPVMALR
ELQXPPVRAFIMPTDCPACGTALAPAKEGDIDIRCPNARSCPAQLTERVAHLAGRGGFDI
EALGYEAARALTAGPGPDPAQNNGVIAPSGPGPLTSEAQVFSLAEVDLSGVVVWREIRAK
GXGTGRFQQVPYFYTKPTLKKPSVPSKTTEKLYEELXKAKTAPLWRVLVALSIRHVGPTA
SRALATRYSTMAAIQDALLAADAREQLANVDGVGGIIAEALMEWFGITWHQEIINAWAAD
GVLMADAVDESAPRTLEGLTIVVTGTLPTLSRDEAKEAIIARGGKAAGSVSXNTSYVVAG
ESAGTKLDKAEALGIPVLDEEAFIQLLATGPARLDAHDPSLASP
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgaggttagatggaaccgtgactagccctcaagagacccccgattcaacaccgtcagct
acnttcctgccaacagcggccgaacgcgaccgctacgctgaactggttgatctgatacan
aaataccgtgcagcgtactacaacgatgacgcncccatcgtctccgacgccgaattcgat
ctgctctacagtgagctggaaacccttgaggcgctgcaaccggaactcgtcaccggtgat
tccccaacccagagcgttggtggagacgtctcggtggccttcaccgccgtcgaccatttg
gccagaatgtactcgctggaggacgttttctcccttgcggaattagaagcgtggttgaac
agggctgcggcctctgtggacaagcgtggcggacaggcgccgcaatggctgaccgagctg
aagattgatggcctggccgtgaatttgctatatcgcgacggcgtactggtgcgggcggcc
acccgtggtgacggcaccacaggtgaggacatcacccacaatgtggccaccatcaaggac
attccccagcgcctgcacggggccaattttcccgctgaagtggagatccgcggcgaagtg
ttcatcgcctccaaagatttcattacgttaaacgagcagatggtcgcggccggtaaagca
ccctttgccaacccacggaactccgctgccggctcattacgccagaaagatccagcggaa
acagcgaagcggccgctgagcatgtttgtccacgggatcggggcgcgtgaggggctaacg
accgccactcaatcagaaacttatgaactgctaaaatcgtggggcatgcccatcagcccg
tactacaaggtgctggacacactgcctgaagtcatggcgttcatcgcctattatggcgag
cacagacacgatgtgatccacgagatcgacggcattgttgtaaaggttgacgatcttggc
acgcagcgcgaactgggccacacctcacgagtgccgcgctggtccgtggcgtacaagtan
cccccggaagaagtcaacaccaaactcctggatatcaaagtgaacgttggccgcacaggt
cgcgtcacnccctacgggatcatggaaccggttaaagtggccggatctgtggtgaccatg
gcgaccttgcacaaccaagacgtggtcaaggccaaggggatcatgatcggtgacatcgtt
gtgctgcgcaaagccggggatgtgattcccgagattgtcggccccgtcatggcgctgcgc
gagttgcaaaanccgccggtgcgcgctttcatcatgcccaccgactgcccggcgtgcggt
acggctctggcaccggcgaaagaaggcgacatcgacatccgctgccccaacgcccgttcc
tgcccggcgcaattgaccgaacgcgtggctcacctcgccgggcgcggtggcttcgacatt
gaggctttaggctatgaagccgctagggccctgacagcgggcccaggaccagacccggcg
caaaacaatggggtgattgccccatcgggcccaggccctttgaccagtgaagcgcaagtg
ttctcgctagcggaagtggacctgtccggcgtcgtagtctggcgtgaaatccgggcaaag
gggcanggtacaggacggttccagcaggttccgtacttttacacgaagccaactctcaag
aagccctcggtgcctagtaagaccaccgagaagctgtacgaggaactgganaaagccaag
accgccccgttgtggagggtcttggtagcgctatccatccggcatgtcggtcccacagcg
tcgcgcgctctggccacacggtactccaccatggcagccatccaggacgcgctcctggcc
gcagatgcccgcgagcaactagcaaatgttgacggtgtgggtggcatcattgctgaggcg
ctgatggagtggtttggcattacctggcaccaggagatcatcaatgcttgggccgctgac
ggggtacttatggccgacgcggtggacgaatccgctccgcgcaccctggaagggctaacc
attgtggtgaccgggacgctgccaaccctcagccgcgatgaggcgaaggaagcaatcatt
gcccgcggcggcaaggcggccggatcggtctccaanaacacctcttacgtagtggcaggg
gaaagcgccggcacaaaactggacaaggctgaggcgttgggcatccccgtgctggatgag
gaagcntttatccaattgctcgccactggaccagcccgcttggacgcacacgaccccagc
cttgccagcccctaa
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