Ancylobacter polymorphus: K9D25_09290
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Entry
K9D25_09290 CDS
T08152
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apol
Ancylobacter polymorphus
Pathway
apol03030
DNA replication
apol03410
Base excision repair
apol03420
Nucleotide excision repair
apol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K9D25_09290 (ligA)
03410 Base excision repair
K9D25_09290 (ligA)
03420 Nucleotide excision repair
K9D25_09290 (ligA)
03430 Mismatch repair
K9D25_09290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apol03032
]
K9D25_09290 (ligA)
03400 DNA repair and recombination proteins [BR:
apol03400
]
K9D25_09290 (ligA)
Enzymes [BR:
apol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K9D25_09290 (ligA)
DNA replication proteins [BR:
apol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K9D25_09290 (ligA)
DNA repair and recombination proteins [BR:
apol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K9D25_09290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9D25_09290 (ligA)
MMR (mismatch excision repair)
DNA ligase
K9D25_09290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K9D25_09290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Bep_C_terminal
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UOK73142
UniProt:
A0A9E7A042
LinkDB
All DBs
Position
1986757..1988883
Genome browser
AA seq
708 aa
AA seq
DB search
MTADEAARAHAKLGEEIAGHDRRYYQDDAPTVSDAAYDALRRRYEAIEAQFPELRGMDSL
SEKVGAAPSAKFAKVRHAVPMLSLGNAFADEEVEEFVARVRRFLGLAADTEVTFTAEPKI
DGLSCSLRYENGVFVQAATRGDGFEGEDVTANVRTIGEIPQRLKGADVPDVFEVRGEVYM
GHDAFAAINERQQEAGKPLFANPRNAAAGSLRQLDPKITASRPLRFFAYAWGEVSEAGLP
ADTQFGVIEAFKRWGLPTNPLTVRCHTAAELLAHYRLIGEQRAMLGYDIDGVVYKVDSLA
LQGRLGFVSRSPRWALAHKFPAQRAVTRLERIEIQVGRTGALTPVAKLTPVTVGGVVVSN
ASLHNEDYIRGIGGNGEPIRGGVDIREGDWVVIQRAGDVIPQVVAVETERRPADARPYAF
PTLCPACGSHAVREEGEAVRRCTGGLICPAQAVERIRHFVSRDAFDIEGLGEKQVQAFYE
AGLVKQPADIFTLEARDSAPGALTRLKNREGWGETSAKNLFAAIASRRQVPVNRFLYALG
IRHVGETNAKRLLRHFPTIEALRETALAAIPPGEAHPKGNEAWQEIIGIEGIGAVVAEAV
VDFFGEPNNQAAVEALLGEVTPEPMEAVASAGAVNGKTVVFTGALEKMTRDEAKAMAERL
GAKVAGSVSKKTDYVVAGADAGTKLAKARELGVAVLTEDEWLALAGAS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgacgaagcggcgcgtgcgcacgcaaagctgggcgaggagatcgccggccat
gaccggcgctattaccaggacgacgcgccgaccgtctccgatgcggcgtatgacgcgctg
cgccggcgctatgaggcgatcgaggcacagtttcccgaattgcgcggcatggacagcctc
tcggagaaggtcggggccgcgccttccgccaaattcgccaaggtgcgccatgcggtgccg
atgctctcgctgggaaatgccttcgccgacgaggaggtggaggaatttgtcgcccgcgtg
cgccgcttcctcggccttgccgcagacacggaggtgaccttcaccgccgagccgaagatc
gacgggctgtcctgctcgctacgctacgagaatggcgtgttcgtgcaggcggcgacgcgt
ggcgacggcttcgagggcgaggatgtcaccgccaatgtccgcaccatcggcgaaattccc
cagcggctgaagggcgcggatgtgcctgatgtgttcgaggtgcgcggcgaggtctatatg
ggccacgacgccttcgccgccataaatgagcgccagcaggaggccggcaagccgcttttc
gccaatccgcgcaacgcggcggccggcagcctgcgccagctggaccccaagatcacagcg
agccgaccgctacgcttcttcgcctatgcctggggcgaggtgagtgaggctgggctgccc
gccgatacgcagttcggcgtcatcgaggcgttcaagcgctgggggctgccgaccaacccg
ctcacggtgcgctgccacacggcggcggagctgctggcgcattaccgcctgatcggtgag
cagcgggccatgctcggctatgacattgacggcgtcgtctacaaggtcgacagcctcgcg
ctgcaggggcggctcggttttgtctcccgttcgccgcgctgggcgctggcgcacaagttt
ccggcgcagcgggcggtgacccggctggagcgcatcgaaatccaggtcgggcgcaccggc
gcgctgaccccggtcgccaaactcaccccggtgacggtgggcggcgtcgtggtctccaac
gcctcgttgcacaatgaggattatattcgcggcatcggcggcaatggcgagccgatccgc
ggtggagtcgatattcgcgagggcgattgggtggtgatccagcgcgccggcgatgtgatt
cctcaagtggtagcggtcgagaccgagcgccgtcccgccgatgccagaccctacgccttc
cccaccctctgccccgcctgcggctcccatgccgtgcgcgaggagggcgaggcggtgcgc
cgctgcacgggcgggctcatctgcccggcgcaggcggtggagcgcatccgccattttgtc
tcgcgcgacgccttcgacatcgaagggctgggcgagaagcaggtgcaggccttctatgag
gctgggctggtgaagcagccggcggatatcttcacgctggaggcccgcgattcggccccc
ggagcgctcacccggctcaagaaccgcgagggctggggcgagacctcggcgaagaatctg
ttcgccgccatcgcctcgcgccggcaggtgccggtgaaccgtttcctctacgcgctcggc
atccgtcatgtcggcgaaaccaatgccaagcgcctgctgcgccatttcccaaccatcgag
gcactgcgcgagacggcgctggcggcgataccccctggcgaggcgcaccccaagggcaac
gaggcctggcaggagatcataggcatcgagggcatcggcgcggtggtggcggaggcggtg
gtcgatttcttcggtgagccgaacaaccaggcggcagtcgaggcgctgctgggcgaggtg
acgcccgagcccatggaagcggtcgccagcgctggtgcggtcaacggcaagaccgtggtg
ttcaccggcgcgctggagaagatgacccgcgacgaggccaaggccatggccgagcggctg
ggcgccaaagtggcaggctccgtgtcgaagaagaccgattacgtcgtcgccggcgccgat
gcgggcaccaagctcgccaaggcccgggaactgggcgtggcggtgctcaccgaggacgag
tggctggctctggccggcgccagttga
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