KEGG   Acetobacter pomorum: CPF11_10675
Entry
CPF11_10675       CDS       T05180                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
apom  Acetobacter pomorum
Pathway
apom03030  DNA replication
apom03410  Base excision repair
apom03420  Nucleotide excision repair
apom03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apom00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CPF11_10675
   03410 Base excision repair
    CPF11_10675
   03420 Nucleotide excision repair
    CPF11_10675
   03430 Mismatch repair
    CPF11_10675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apom03032]
    CPF11_10675
   03400 DNA repair and recombination proteins [BR:apom03400]
    CPF11_10675
Enzymes [BR:apom01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CPF11_10675
DNA replication proteins [BR:apom03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CPF11_10675
DNA repair and recombination proteins [BR:apom03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CPF11_10675
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CPF11_10675
   MMR (mismatch excision repair)
    DNA ligase
     CPF11_10675
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CPF11_10675
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT Nlig-Ia HHH_5 Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: ATI12863
LinkDB
Position
complement(2261544..2263631)
AA seq 695 aa
MPEPAFLPATMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQ
HPQAEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQEA
TEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYP
DLIEIRGEVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDSKITAQRPLSLFAY
ALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAYDIDG
VVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAHLEPV
NVGGVLVMRATLHNEDEIARKDVRPGDMVFIQRAGDVIPQVLGVAPSTDSTPRQAPYHFP
DHCPACGAAAVRPEGEAVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLGDRSIREFHDI
GLILTPGDIFRLHEHAADIEKRDGWGEQSVQKLLQAIESRRTISLSRFIYALGIRRIGAS
NARLLARHYGTYENWFNQMQAAAIIGSDARLELGSITGIGTTTAEDLVAFVAEEHNLQTL
ADLRANLTITEETAASEGALAGKTIVFTGTLHTMTRPEAKATAERMGAKVSDSVSKKTDL
VVLGEKAGSKAKKAVELGLQTMDEAEWNAFCSEQE
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgcctgaacccgcctttcttcccgctacaatgacactccaacaagcacgggaagaactg
gagcaccttgccgccgaaattgcccaccataacgcggcttactatcggaacgatgcgcca
gaaatcagcgatgcagaatatgatgccctgcgtaggcggtatgatgccattgtggctcag
cacccacaggccgaaccagaaaatagcgcagcccaagccgtaggggccgcacccgataca
gcttttggcaagcacatccaccttgtgcccatgctctcgctggacaacgtgtttgaccgg
gaagattttgaaggctttatcagccgcgccacacgctttttagggctggatcaggaagcg
acagaacaactgatttttgtaggggagcccaaaattgatggcctttctatcagcctaacc
tacgaaaaaggccgttttgtacgtggcaccacccgcggcgatggcactgaaggcgaagac
gttaccgccaatttgcgcacacttaaggatttgccgttacgcctttctggctcctacccc
gatctcatcgaaattcgtggtgaggtttttctttccaaaaagcactttctggaactcaac
gcagcgcaagaagctgcaaacaaacggctgtttgccaacccgcgtaatgcagccgcgggt
tcattacggcagctagattccaaaattacggcacaacgcccgctgtccttattcgcttat
gcacttggtttctgctcagaaaaaatcagccgcagccattgggcttatctggagcaactc
aaagcatggggttttccggttaatccgctttctcgccagattaaaggcgtagaagatgcc
gaagtcttttttgcggaagtcagccagaatcgggctgaacttgcctacgatattgatggt
gttgtttacaaaattgatgatctggccctgcaagaacgcttaggttttgcaggccgcgcc
ccgcgctgggccattgcgtggaagtttccggcggaacaggcggttacccgcctgaaagaa
atagaaattcaggttggccgcacaggtgcgctcacccctgttgcacatctggagccggta
aatgttggtggtgtgctggttatgcgcgcaaccttgcataatgaagatgaaattgcccgc
aaggatgtccgccccggtgatatggtttttatccagcgggcgggagatgttatccctcaa
gtgttgggcgttgccccttctacagatagcacgccccggcaggcaccttatcacttcccc
gatcattgccctgcttgcggtgcggcggcggtgcggccagaaggcgaagctgtgcgccgt
tgcacaggtgggcttacctgccccgcgcaggttgtggagcggctgatccactttgtttcc
cgccaagcgtttgacattgaaggcttgggagaccgcagtattcgtgaattccacgatatc
ggcctgattttaacacctggtgatattttccgtctgcatgaacacgccgcagacatagaa
aagcgcgatggttggggcgagcaatctgttcaaaagctgttgcaggccatagagagccgc
cgcaccatttctctttctcgttttatttatgcgcttggcatccgtcggattggcgccagc
aatgcccgcctgctggcacgccactatggcacctatgaaaactggtttaaccagatgcag
gctgccgccattattggatctgacgcacggctggaactgggttccattaccggtataggc
acaaccacagcagaagatctggtggcctttgtggcagaagaacataacctgcaaacattg
gcggatttacgcgcaaatctgaccataacggaagaaaccgcagcatccgaaggtgccttg
gctggcaaaaccattgtgtttaccggcaccctacacaccatgacacggccagaagccaaa
gcaacggcagaacgcatgggcgctaaggtttcggattctgtttccaaaaaaacagatctg
gttgttctgggggaaaaagctggctcaaaggccaaaaaggctgtggaacttggccttcag
accatggatgaagcagaatggaacgctttttgctccgagcaggaatag

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