Acinetobacter portensis: MZO21_03225
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Entry
MZO21_03225 CDS
T08876
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apot
Acinetobacter portensis
Pathway
apot03030
DNA replication
apot03410
Base excision repair
apot03420
Nucleotide excision repair
apot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MZO21_03225 (ligA)
03410 Base excision repair
MZO21_03225 (ligA)
03420 Nucleotide excision repair
MZO21_03225 (ligA)
03430 Mismatch repair
MZO21_03225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apot03032
]
MZO21_03225 (ligA)
03400 DNA repair and recombination proteins [BR:
apot03400
]
MZO21_03225 (ligA)
Enzymes [BR:
apot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MZO21_03225 (ligA)
DNA replication proteins [BR:
apot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MZO21_03225 (ligA)
DNA repair and recombination proteins [BR:
apot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MZO21_03225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MZO21_03225 (ligA)
MMR (mismatch excision repair)
DNA ligase
MZO21_03225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MZO21_03225 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UPO23854
LinkDB
All DBs
Position
628895..630934
Genome browser
AA seq
679 aa
AA seq
DB search
MTQNSAVVAQMRQLIQLLAQHNHAYYVMDQPTIEDSEYDQLFHQLKALEQQHSDLIQPDS
PINKVGGKPLSKFENITHAVPMLSLGNVFNQEDLFAFARRIEERLPNQKIEYDVELKFDG
LAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSEKGAIPELLEVRGEVLM
PKSGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQ
TTMSASLDWLTQFGFAVGERHFVCESIQDVQKAYEQINEERPDLTVEIDGMVIKVNDLNQ
QQKLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRVGDTVSVYRSGDVIPKVEKVWPEFRPVDTVEVHLPESCPVCSSPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWAESLLHLDLLKDVADIYH
LHEHREKLLTIEKMGEKSVQNLIDSIENSKKTSFASFIFALGIRGVGETTARMLANTFQS
LEALRAADLEALKKTPDVGDITAEWIIDFFQAPHNLEVVDRLIAAGIHWDAPVAPTRQPL
NGESWVVTGTLSSMGRDEATQLLQTLGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGIP
VLNEEQFIALMKEHGQIEG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaattcggctgtcgttgcgcaaatgcgtcaattgattcaattactggctcag
cacaatcatgcttattatgtaatggatcaaccaactatcgaagacagtgaatatgatcag
ttatttcatcaattaaaagctttagagcaacaacattcagatttaattcagccagattcg
cctataaataaagtgggtgggaagccattatcaaaatttgaaaatattacccatgctgtt
ccaatgttgtctttgggaaatgtctttaatcaagaagatttatttgccttcgcacgacgt
attgaagaacgcttaccaaatcaaaaaattgaatatgatgttgagctaaagtttgatggt
ttggcaatttcattgtggtatgaaaatggtgttttggtgcgtggtgtaacccgtggagat
ggcgaaactggtgaagatattacgcaaaatgtaaaaacgattcgtaatttgccaaaagtt
ttatcttcagaaaaaggtgctattcctgaacttttagaagttcgcggtgaagtgcttatg
cctaaatcaggctttgaaaaactcaatgctgaaaatgaagcaaaaggcgaaaaaactttt
gcgaatccacgtaatgcggcagcaggaagtttacgccagctcgatccaaatattgcagct
tctcgtccgcttgcattttatgcttatggaattgcacagtgcgtaccgcatcatggtcaa
acgaccatgtctgcaagtttagactggcttacacaatttggttttgctgtaggtgagcgt
cattttgtttgtgaaagcattcaagacgttcaaaaagcttatgaacaaattaatgaagag
cgcccagacttaacagttgaaattgatggcatggtcattaaagtaaatgacctgaatcaa
caacaaaaattaggctttttaagtcgtgaaccacgttgggcaactgcgtataaatttcct
gcggtcgcagctttaacaacagtagaaaatattgattggcaagtagggcgtacaggaaca
cttacacctgttgcacgtttaaaccctgttgctgtgggcggtgtaaccgtttcaaatgtc
actttgcataatattggtgaaattcatcgtttagatgtgcgtgtaggcgatacagtcagc
gtttaccgtagtggcgatgtgattccgaaggttgagaaagtttggcctgaattccgtcct
gtcgatacagtagaagttcatttacctgaatcttgtcctgtgtgttcttcacctgtggta
atgcctgaaggtgaagctttggcacgttgttcgggtggtttgtattgcgccgcgcaacgt
attgaagccattcgtcattttgtttcacgtaaagcgatggatattgaaggcttgggtgat
cgttgggcggaatctttattacatctagatttgcttaaagatgttgccgatatttatcat
ttgcatgagcatcgtgaaaaattactcactattgaaaaaatgggtgaaaagtcagttcaa
aatcttatcgactcaattgaaaacagtaagaaaacaagctttgcgagttttatttttgca
ttgggtattcgtggtgtaggtgaaacaacagcacgtatgcttgccaatacctttcaatct
ttagaagcacttcgagcagcagatttagaagcattaaagaaaacaccagatgtcggtgat
attactgctgaatggattatcgacttttttcaagcgccacataatttagaagtggttgat
cgtttaattgcggcaggtattcattgggatgcgcctgttgcgccaacacgtcagccattg
aatggtgaaagctgggtggttacaggtacgctgagctcaatgggacgtgatgaagcaaca
caacttttacaaaccttaggcgcgcgagtaagtggcagtgtttctagtaaaaccaagtgt
gttgttgctggtgaaaaagcaggttcgaaacttgagaaagcagaaaaattgggtattcca
gttttaaatgaagaacagtttattgctttgatgaaagagcatggtcaaatcgagggttaa
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