Ancylobacter pratisalsi: G3A50_06770
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Entry
G3A50_06770 CDS
T06476
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apra
Ancylobacter pratisalsi
Pathway
apra03030
DNA replication
apra03410
Base excision repair
apra03420
Nucleotide excision repair
apra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3A50_06770 (ligA)
03410 Base excision repair
G3A50_06770 (ligA)
03420 Nucleotide excision repair
G3A50_06770 (ligA)
03430 Mismatch repair
G3A50_06770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apra03032
]
G3A50_06770 (ligA)
03400 DNA repair and recombination proteins [BR:
apra03400
]
G3A50_06770 (ligA)
Enzymes [BR:
apra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3A50_06770 (ligA)
DNA replication proteins [BR:
apra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3A50_06770 (ligA)
DNA repair and recombination proteins [BR:
apra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3A50_06770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3A50_06770 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3A50_06770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3A50_06770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DUF4796_N
5_3_exonuc
Bep_C_terminal
Zn_ribbon_NUD
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QIB33441
UniProt:
A0A6P1YL67
LinkDB
All DBs
Position
complement(1398431..1400611)
Genome browser
AA seq
726 aa
AA seq
DB search
MNASTPDIDVARLTADEAAREHARLGEEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE
AAFPELRDVESLSEKVGAAPSAKFAKIRHNVPMLSLGNAFADEDVEEFVARIRRFLNLGA
EADIVLTAEPKIDGLSCSLRYQKGLLVSAATRGDGFEGEDVTANVRTISEIPAQLSGRDM
FEIPDVFEVRGEVYMGHADFAALNERQQEAGRPLFANPRNAAAGSLRQLDPKITASRPLK
FFAYAWGEVSAGGLPADTQHGVIEAFKRWGLPTNPLTVQCHSAAELLAHYHAIEDQRAAL
GYDIDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAERAVTQLEAIDIQVGRTGALTPV
AKLTPITVGGVVVSNASLHNEDYIAGLNSRGERFREADIRVGDWVTIQRAGDVIPQVVDV
VLDRRPEGTQKFTFPQTCPVCGSHAVREEGESVRRCTGGLICSAQAVERIRHFVSRNAFD
IEGLGEKQVQAFYDAGLVKQPADIFTLEARDSAPGELTRLKNREGWGETSAKNLFAAIAA
RRTVPVNRFLYALGIRHVGETNAKRLMRHYGTIEALREAAKAAIMPDPKDRPGDYPKGNE
IWQELVATEGIGAVVAEAVVDFFTEPNNEAALDALLREVTPEPMEPPVAAGAVAGKTVVF
TGSLEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLTKARDLGVAVLTEDEW
LALAQG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcacgcccgacatcgacgtcgcccgcctgaccgccgacgaggcggcccgt
gaacatgcccggctcggcgaggagatcgccggccacgacaggcgctactatcaggacgac
gccccgagcgtctccgacgccgattatgacgcactgcgccgacgctatgaggcgatcgag
gctgcgttcccggaactgcgcgacgtcgaaagcctgtcggagaaagtcggcgcggcgccc
tcggccaaatttgccaagatccggcacaacgtgccgatgctctcgctcggcaatgccttt
gccgacgaggatgtcgaggaattcgtcgcccgcatccgccgcttcctcaatctcggagcg
gaggccgatatcgtgctgaccgccgagccgaagattgacggcctgtcctgctcgctgcgc
taccagaagggcctgctggtcagtgccgccacgcgtggcgatggttttgagggcgaggac
gtcaccgccaatgtgcgcaccataagcgagatacccgcgcagctttccggccgcgacatg
ttcgagattcccgacgtgttcgaggtgcgcggcgaggtctatatgggccatgccgatttc
gcggcgctgaacgagcgccagcaggaggccggccgcccgctcttcgccaatccgcgcaac
gcggcggcgggaagcctgcgccagctcgatccgaagatcacggccagccggccgctgaaa
ttcttcgcttatgcctggggcgaggtctcggcgggcggcctgccggccgacacccagcat
ggcgtgatcgaggccttcaagcgctggggcctgccgaccaatcctctgaccgtacaatgc
cattccgccgccgagctgctggcgcattaccacgccatcgaggaccagcgcgccgcgctg
ggctacgacattgacggggtggtctacaaggtggacagcctggcgctgcagcagcggctc
ggcttcgtctcgcgctcgccgcgctgggcgctggcgcataaatttcccgccgaacgcgcg
gtgacgcagcttgaggcgatcgacatccaggtcgggcgcaccggcgcgctgacgccggtg
gccaaattgacgccgatcaccgtgggcggcgtggtggtctccaacgcctcgctgcacaat
gaagactacatcgccggcctcaacagccggggcgagcgcttccgcgaggcggatatccgg
gttggcgactgggtgacgatccagcgcgcgggcgatgtgatcccgcaggtcgtcgacgtg
gtgctggaccgccggcccgagggcacgcagaaattcaccttcccgcagacctgcccggtc
tgcggctcccacgcggtacgcgaggagggggaatcggtgcgccgctgcaccggcggactg
atctgctcggcgcaggcggtggagcgcattcgccatttcgtctcccgcaacgccttcgac
atcgaggggctcggcgaaaagcaggtgcaggcgttctatgatgccgggctggtgaagcag
ccggcggacatcttcacgctggaggcacgcgattccgcgcccggcgagctgacgcggctg
aagaatcgcgagggctggggcgagacctcggcgaagaacctgttcgccgccatcgccgcg
cggcggacggtgccggtgaaccgctttctgtacgcgctgggcatccgccatgtcggggag
accaacgccaagcggctgatgcggcactacggcaccatcgaggcgctgcgggaggccgca
aaggccgcgatcatgccggaccccaaggacaggcccggcgattacccaaagggcaatgag
atctggcaggaactggtcgccaccgagggcatcggcgcggtcgtcgccgaggcggtggtc
gatttcttcaccgagcccaacaacgaggccgcgctcgacgcgctgctgagggaggtgacc
cccgagccgatggagccgccggtggcagccggcgccgtggcgggcaagacggtggtgttt
accggatcgctggagaagatgacccgcgacgaggccaaggccatggccgagcggctaggc
gccaaggtggctggctcggtgtcgaagaagaccgactatgtcgtggccggggcggatgcc
ggctccaagctcaccaaagcccgcgatctgggcgtcgcggtgctcaccgaggacgaatgg
ctggcgctggcacagggctga
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