Acinetobacter proteolyticus: PY247_10040
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Entry
PY247_10040 CDS
T08916
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aprl
Acinetobacter proteolyticus
Pathway
aprl03030
DNA replication
aprl03410
Base excision repair
aprl03420
Nucleotide excision repair
aprl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PY247_10040 (ligA)
03410 Base excision repair
PY247_10040 (ligA)
03420 Nucleotide excision repair
PY247_10040 (ligA)
03430 Mismatch repair
PY247_10040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aprl03032
]
PY247_10040 (ligA)
03400 DNA repair and recombination proteins [BR:
aprl03400
]
PY247_10040 (ligA)
Enzymes [BR:
aprl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PY247_10040 (ligA)
DNA replication proteins [BR:
aprl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PY247_10040 (ligA)
DNA repair and recombination proteins [BR:
aprl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PY247_10040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PY247_10040 (ligA)
MMR (mismatch excision repair)
DNA ligase
PY247_10040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PY247_10040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WEI20034
LinkDB
All DBs
Position
2108419..2110446
Genome browser
AA seq
675 aa
AA seq
DB search
MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP
TNKVGGQALSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMP
KQGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPNHGLE
TMHDSLHWLTRFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWTEFRPVDAEMVHLPENCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRDTLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADIEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLMAAGIHWDAPTAPTRQPLN
GESWVVTGTLETMGRDEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAKKLEIRV
LNEQEFLEFLKQYEA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaactcagttattgagcaaatgcgtcagttgattcaactgattgcaaaacac
aatcatgcttactatgtgatggatcaaccctccatttctgatagtgaatatgaccattta
tttcatcagctgaaagccttagaacaacaatatccagaatgtattcaggccgataccccg
accaataaagtcggtggtcaagcgctatcaaaatttgaaagtgtgactcatgcagtgccg
atgctgtcattggggaatgtctttaatcaggaagacctattcgctttcgcccgtcgtatt
gacgagcgtttaccgaatcagaaagtccagtatgaggttgaactgaaactcgatggttta
gcgatttcactgtggtatgaaaatggtgtcttggttcgtggtgtaacacgtggtgatggt
gaaacaggcgaggatattacccagaatgttaaaaccattcggaatctgccgaaagtatta
tccagtcagcatcaagcgatcccagagtttcttgaggttcgtggtgaagtgttgatgcca
aagcaaggctttgaaaagctcaatgccgatcaagaagccaaaggtgacaagacctttgcc
aatccacgtaatgccgcagcaggaagcctgcgtcaacttgatccaaatatcgcagcttca
cgtcccttggcgttctatgcttatgggattgcgcaatgtcagcccaaccatggtcttgaa
accatgcatgacagcctgcactggttaactcgatttggttttgaaattgcagaacgtcaa
ttcctgtgtgcttcgattgaagaagtgcaacaacgttatgaacagattcaacaagaacgt
ccagatcttaaagttgaaattgatggcatggtcattaaggtggacagccttaaacagcag
caacagctcggcttcctgagtcgtgaaccgcgttgggcaacggcctataaattcccagct
caggctgcactgaccaaagttgaaaatattgattggcaagtgggtcgtacaggaacactg
acacctgtcgcacgtttagcacccgtctttgttggtggggtaacggtgtctaatgtgacc
ttgcataatattggcgaaatccatcgtttagatgtgcgtgttggcgatactgtgagtgtt
taccgtactggcgatgtgattccaaaagtcgaaaaagtctggacggagttccgtcctgtg
gatgctgagatggtgcatcttccagaaaattgtccagtctgtgattcgcctgtggtgatg
ccagaaggtgaagccttggcacgttgttcaggcggtttgtattgtgcagcacaacggatt
gaagccattcgtcactttgtttcacgtaaagcattggatattgagggcttgggcgatcgt
tgggtagagtcactgttacatctcgatctactcaaagatgtggctgatatttatcatttg
catgagcatcgtgacaccttattgaccatcgaaaaaatgggtgagaaatctgttcagaac
ttgattgatgcgattgaggcaagtaaaaaaaccactttggcgcgttttatctatgccttg
ggaattcgtggtgtcggtgaaactacagcacgcatgttggccaataccttccagacgctt
gaagcgttgaaagctgcagatattgaagcactcaagaaaacgcctgatgtcggtgatatt
actgctgaatggattgccgactttttccaagcaccacataacatcgaagtgttggatcgt
ttaatggcagcaggcattcattgggatgcaccgactgcaccgacacgccagccattaaat
ggcgaaagttgggtggtgacaggtacattggaaaccatgggacgtgatgaagcaacccag
aaacttcaagccttgggtgcgcgtgtcagtggtagtgtgtccagtaaaaccaaatgtgtg
gttgctggcgagaaagcaggtagtaagctggataaagcaaaaaaacttgaaattcgagtg
ttgaatgagcaagagtttttagaatttttgaagcagtatgaagcctga
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integrated database retrieval system
