Amycolatopsis sp. FBCC-B4732: MUY14_28125
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Entry
MUY14_28125 CDS
T08335
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aprt
Amycolatopsis sp. FBCC-B4732
Pathway
aprt03030
DNA replication
aprt03410
Base excision repair
aprt03420
Nucleotide excision repair
aprt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUY14_28125 (ligA)
03410 Base excision repair
MUY14_28125 (ligA)
03420 Nucleotide excision repair
MUY14_28125 (ligA)
03430 Mismatch repair
MUY14_28125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aprt03032
]
MUY14_28125 (ligA)
03400 DNA repair and recombination proteins [BR:
aprt03400
]
MUY14_28125 (ligA)
Enzymes [BR:
aprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUY14_28125 (ligA)
DNA replication proteins [BR:
aprt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUY14_28125 (ligA)
DNA repair and recombination proteins [BR:
aprt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUY14_28125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUY14_28125 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUY14_28125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUY14_28125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UOX85642
LinkDB
All DBs
Position
complement(6438082..6440265)
Genome browser
AA seq
727 aa
AA seq
DB search
MSSTELPQDQIAAVDAPVAAEDVTDVPADVRERHSALAEELRNHQFRYYVLDSPIISDGQ
FDELLGELQQLEEAHPALVTPESPSQRVGGTFSTEFTAYDHLERMLSLDNVFDRDEFLAW
VERVEKEVGRTEFLAELKIDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPE
TLTGSDQFPVPALVEVRGEVYFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKI
TRERRLRLICHGLGKREGFEPQRQSEAYDALAAWGLPVSPHSKVLSTAEELTEHIVYWGE
HRHDAEHEIDGVVIKVDQVTLQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTG
RVTPFAVTEPVKVAGSTVARATLHNAEEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDAR
TGDEREFVMPTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLIANLDAAKDRPL
WKVLVALSIRHVGPTAAQALAREFGSIERIEHATEEELADVDGVGPTIARATREWFEVGW
HCEIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKEVIMARGGKAAGS
VSKKTAFVVVGDAPGSKYDKAVQLKVPVLDEAGFRVLLERGPEAAQEMALPAGDETEETD
ESGETDG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcaccgaactcccccaggaccagatcgcggcggtcgacgctccggtcgccgcc
gaggacgtcaccgacgtcccggccgacgtgcgtgagcggcacagcgcccttgccgaggaa
ctgcggaaccaccagttccgctactacgtcctggactcgccgatcatctccgacgggcag
ttcgacgagctcctgggcgagctccagcagctcgaggaagcgcacccggcgctggtcacg
cccgagtcgccgagccagcgggtcggaggcactttctcgaccgaattcaccgcgtacgac
cacctcgaacgcatgctcagcctggacaacgtgttcgaccgggacgagttcctcgcctgg
gtggagcgcgtcgagaaggaggtcgggcgcaccgagttcctcgccgagctgaagatcgac
ggcttggcgatcaacctcttgtacgaaaacggccacctcacccgcgcgctcacccggggt
gacggccggaccggcgaggacgtcacgctcaacgtccgcacgctcgaccaggtaccggag
acgctgaccggctccgaccagttcccggtgcccgcgctcgtcgaggtgcgcggcgaggtc
tacttccgcgtcgaggacttcctcgagctgaacgcgaagatggtcgaagcggggaagccg
ccgtacgcgaatccgcgcaacaccgcggccggctcgctgcggcagaaggaccccaagatc
acccgggagcggcggctgcggctgatctgccacgggctcggcaagcgcgagggcttcgag
ccgcagcgccagtcggaggcgtacgacgcgctggcggcgtgggggctgccggtgtctccg
cacagcaaggtcctgtcgacggccgaggagctcaccgagcacatcgtctactggggcgag
caccggcacgacgccgagcacgagatcgacggcgtcgtcatcaaagtcgaccaggtgacg
ttgcagcggcggctgggcacgacgtcgcgcgcgccgcgctgggcgatcgcctacaagtac
ccgccggaagaggccatcaccacgctgctggacatccaggtcggcgtcgggcgcaccggg
cgggtgacgccgttcgcggtcaccgagccggtcaaggtcgccgggtcgaccgtggcccgg
gccacgcttcacaacgccgaagaggtcaagcgcaagggcgtgctgatcggcgaccggatc
gtcatccggaaggccggcgacgtcatccccgaggtcctcgggccggtggtggacgcgcgc
acgggcgacgagcgcgagttcgtcatgcccacccactgccccgaatgcggtaccgagctc
gcctatcagaaggaaggcgacaaggacatccgctgcccgaacacgcggttctgtcccgcg
cagctgcgggagcggctcttccacctggccgggcgcggcgcgttcgacatcgaggtcctc
gggtacgaggcggcggtcgcgctgctcgacgcgcgcgtggtcgccgacgaaggcgatgtc
ttcgatttgaacgaagagagcctcgccgaggtggagctgttccgcacgaaggccggcgat
ttgtcggcaaacgcgcgaaagctgatcgccaacctcgacgcggcgaaggaccggccgctg
tggaaggtgctcgtcgcgttgtcgatccggcacgtcgggccgaccgcggcgcaggcgctg
gcccgcgagttcggctcgatcgagcggatcgagcatgccaccgaagaagagctcgccgac
gtcgacggcgtgggcccgaccatcgcccgcgcgacgcgggagtggttcgaggtgggctgg
cactgcgagatcgtcgaaaaatggcgacgcgccggcgtgcggatggaagaggagcgcgac
gagtcgatcccgcgcaacctcgaagggctgtcgatcgtggtgacgggctcgctcgacggc
ttctcccgcgacgaagccaaagaggtcatcatggcgcgtggtggcaaggccgccgggtcg
gtttcgaagaagaccgcgttcgtcgtcgtcggcgatgcgcctggttcgaaatacgacaag
gccgtgcagctcaaggtgccggtgctcgacgaagccggcttccgcgtccttctggagcgg
gggcccgaagcggcgcaggagatggcgctgccggccggcgacgagaccgaggagaccgac
gagtccggggagacggatgggtga
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